View Redoxidase 275

Entry information : LuPrx04(FLXPER4|Lus10003573|PACid:23165480)

Entry ID	275
Creation	2006-06-23 (Christophe Dunand)
Last sequence changes	2013-05-29 (Qiang Li)
Sequence status	partial
Reviewer	Not yet reviewed
Last annotation changes	2013-05-30 (Qiang LI)

Peroxidase information: LuPrx04(FLXPER4|Lus10003573|PACid:23165480)

Name

LuPrx04(FLXPER4|Lus10003573|PACid:23165480)

Class

Class III peroxidase [Orthogroup: Prx018]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Linaceae Linum

Organism

Linum usitatissimum (flax) [TaxId: 4006 ]

Cellular localisation

N/D

Tissue types

Leaves
Seedlings
Stems

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LuPrx04 start..stop	S start..stop
PatrPrx01	486	3.64e-175	5..305	15..316
PtPrx53	481	3.54e-173	5..305	15..316
LePrx72	472	8.47e-170	3..305	17..320
AcoPrx64	471	1.75e-169	1..305	11..320

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	30958..31134	175	N° 2	31420..31611	190	N° 3	31845..32393	547
join(30958..31134,31420..31611,31845..32393)

Literature and cross-references LuPrx04(FLXPER4|Lus10003573|PACid:23165480)

Literature	Omann,F. and Tyson,H. cDNA sequence of a basic peroxidase (FLXPER4) in flax Unpublished
Protein ref.	UniProtKB: O65029
DNA ref.	Phytozome 12: scaffold536 (30958..32393)
mRNA ref.	GenBank: AF049881

Protein sequence: LuPrx04(FLXPER4|Lus10003573|PACid:23165480)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	305
PWM (Da):	32297.05	Transmb domain:	i7-29o
PI (pH):	8.21

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

FAMSLLASSGSAQLAANFYATSCPTLLTIVRNAMTQAVNSENRMAASILRLHFHDCFVNGCDGSLLLDDTATFTGEKNAGPNQNSVRGFDIIDTIKTRVEAACNATVSCADILALAARDG
VVLVGGPTWTVPLGRRDARTASQSAANAQIPAPGSSLGTITNLFTNKGLTARDVTILSGAHTIGQARCTTFRQRIYNDTNIDPAFATTRRGNCPQAGAGANLAPLDGTPTQFDNRYYQDL
VARRGLLHSDQELFNNGTQDALVRTYSNNAATFATDFAAAMVRMGNISPLTGTNGEIRFNCRRPN*

Retrieve as FASTA

Remarks

cationic peroxidase. Partial cDNA, small part of the 5' is missing. Cultivar="Stormont cirrus". Partial sequence from genomic. Incorrect prediction.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

TTCGCCATGTCACTGCTGGCCTCTTCAGGAAGCGCTCAGCTCGCCGCCAACTTCTACGCCACCTCATGCCCAACCCTCCTTACTATTGTCCGCAATGCCATGACTCAAGCCGTTAATAGC
GAAAACCGCATGGCCGCCTCCATCCTCCGTCTCCACTTTCATGACTGCTTCGTTAATATGTACGTAATACATATGTCAATACGCTACATTTCCATGTTTGCATATAAGTTTTTCAACATA
TAATCTGATGTTCTATGAATATTAACTACTTATATCTACCCCATGCACCTTAATTTGTGATATATATATTGTCACTTCAAAACTTGGTCAACGGCTGATACTATTGTTATGATCGTAAAA
ATATCTACCCGTCGGGTGGTCCAAATTAAATCGTTCTAATTGTACACATTAAATTATCATTATTAATTTTTTTTATCTTATCTATTTGATTATCGTGTTGGCAGGGTTGTGATGGGTCGC
TACTGTTGGACGATACTGCCACTTTCACTGGCGAGAAGAACGCAGGACCCAACCAAAACTCTGTTAGAGGGTTCGACATAATAGACACGATCAAGACCAGAGTTGAGGCAGCATGCAACG
CCACCGTGTCTTGCGCTGACATCCTTGCTCTCGCAGCCAGAGACGGTGTCGTATTGTGGTAAGAATTCCGAAATATATGCGGAAATTCTCAAATAGCATGCATGCAAAATTCGATACATC
ACTTTTTTTACCTCACATTTTAACCTAGTTAACCAAACAGTAAAAACCGTACGTTCGGGTGAGTAATAATAAGTAACAACTATTAATTCCTTTCAGCACGTAACTATTTTTATCGTTACA
TGAAAAGTCTAAATTGTAATCAATTAATCATTGTGTTTCTATTCCGAGCAGGTAGGCGGGCCCACATGGACGGTCCCACTAGGCCGACGCGACGCGCGGACGGCGAGCCAGAGCGCAGCC
AACGCACAAATCCCAGCCCCAGGGTCAAGCCTAGGAACGATAACCAACTTGTTCACGAACAAGGGCCTCACCGCCCGTGACGTCACAATCCTGTCGGGGGCCCACACGATCGGGCAGGCG
CGTTGCACCACGTTCCGCCAGCGGATCTACAACGACACCAACATCGACCCGGCGTTCGCCACCACCCGGAGGGGGAACTGCCCGCAGGCCGGAGCCGGAGCCAACCTCGCACCGCTGGAC
GGAACCCCGACCCAGTTCGACAACAGGTATTACCAGGATCTGGTGGCGAGGCGCGGGCTGCTCCATTCGGATCAGGAGCTGTTCAACAACGGGACTCAGGACGCGCTGGTGAGGACTTAC
AGCAACAATGCGGCTACTTTTGCTACGGATTTCGCCGCCGCTATGGTGAGGATGGGGAACATCAGCCCGTTGACCGGGACCAACGGGGAGATCAGATTTAACTGCAGGAGGCCTAATTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA