Entry information : SbPrx[P]90 (Sobic.006G013200[2.1] / SB06G001300[1.4])
Entry ID 2761
Creation 2010-01-07 (Christophe Dunand)
Last sequence changes 2014-08-06 (Messaoudi)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2015-10-15 (Christophe Dunand)
Peroxidase information: SbPrx[P]90 (Sobic.006G013200[2.1] / SB06G001300[1.4])
Name (synonym) SbPrx[P]90 (Sobic.006G013200[2.1] / SB06G001300[1.4])
Class Class III peroxidase     [Orthogroup: Prx026]*
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx[P]90
start..stop
S start..stop
SbPrx78 377 1e-131 1..275 5..273
ZmPrx100 319 6e-109 30..275 38..273
SiPrx22 315 2e-107 9..275 11..260
ZmPrx100_35A19 256 2e-86 30..245 38..243
Literature and cross-references SbPrx[P]90 (Sobic.006G013200[2.1] / SB06G001300[1.4])
Literature Plant Genome Database
DNA ref. Phytozome 12:   chromosome_6 (1861672..1862608)
Protein sequence: SbPrx[P]90 (Sobic.006G013200[2.1] / SB06G001300[1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   275 (254)
PWM (Da):   %s   27756.19 (25732.1)  
PI (pH):   %s   4.31 (4.26) Peptide Signal:   %s   cut: 22 range:22-275
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GTAASHISCL LAVSIVVLTS TVNLRCHASS SAADISPDDD YGDDDDGGGD DGSSSSFSFS FTFQPDTSSP SLVFGFYDET CPDAEDIISS TVRKLCHADP NVAAALVRLx xxxxxxxGCD  ASVLLDGVDG GGRRSERDAG PIQAWGMDAI EAMKQRVEAA CPRTVSCADI LALAARDSLV LVGGPTTYPV LTGRRDSAQS FYHDGGGGGI PPPNATYGMT QAAFARRGRE FTYERETVAL 
LGAHSSGAVR CRFFADRIWN FAGTGAPDDS VDPDM 

Retrieve as FASTA  
Remarks Partial sequence from genomic (chromo 6 ). First exon is partial (no FHDC), frame shift for VALS and 3' end is missing. No EST. Incorrect prediction from Phytozome.
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGCACGGCGG CGAGCCATAT CAGCTGCTTG CTAGCTGTGT CCATCGTCGT CCTTACTAGC ACGGTCAACC TCCGTTGCCA TGCCAGCAGT TCCGCCGCCG ATATCTCACC TGACGATGAC  TATGGTGACG ACGACGACGG TGGCGGCGAC GACGGCAGCT CGTCCTCCTT CTCCTTCTCC TTCACCTTCC AGCCGGACAC GAGTTCACCC AGTCTAGTCT TCGGGTTCTA CGACGAGACG  TGCCCGGACG CCGAGGACAT CATCTCCTCC ACGGTGCGCA AGCTCTGCCA CGCCGACCCC AACGTCGCCG CCGCACTCGT CCGCCTTTCT TCTTCATCCA CGTACGTCCA AACCAACCAA  CCAAACAAAC TCCATTTCAT CCTCCATCTC ACCATCTTTA GCTGCAACAA CGACGACGCT CACACACCAA GACGGACGTT GTCTTCTCTA CGAGCGGCGT GCAGGGCTGC GACGCCTCGG  TGCTACTGGA CGGCGTCGAC GGCGGCGGCC GGAGATCAGA GCGCGACGCC GGACCGAACC AGGCATGGAC GCCATCGAGG CGATGAAGCA GAGAGTGGAG GCGGCGTGTC CAAGAACCGT  CTCCTGCGCG GACATCCTGG CGCTCGCCGC GCGGGACAGC CTCGTCCTCG TCGGCGGACC AACCACCTAC CCGGTCCTCA CGGGCCGCCG CGACAGCGCG CAGAGCTTCT ACCACGACGG  CGGCGGCGGC GGCATCCCGC CGCCGAACGC CACGTACGGC ATGACGCAGG CCGCGTTCGC GCGGCGCGGG CGGGAGTTCA CGTACGnnGA GCGGGAGACC GTCGCGCTGT TAGGAGCGCA 
CAGCAGCATC GGGAAGGTnG CGGTGCGGTG CAGGTTCTTC GCCGACAGGA TCTGGAACTT CGCCGGCACC GGCGCGCCCG ACGACTCCGT CGATCCGGAC 

Retrieve as FASTA