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Entry information : SbPrx140 (Sobic.010G245300.1 [2.1] / Sb10g028460 [1.4])
Entry ID 2762
Creation 2008-11-19 (Christophe Dunand)
Last sequence changes 2008-11-19 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx140 (Sobic.010G245300.1 [2.1] / Sb10g028460 [1.4])
Name (synonym) SbPrx140 (Sobic.010G245300.1 [2.1] / Sb10g028460 [1.4])
Class Class III peroxidase    [Orthogroup: Prx171]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx140
start..stop		 S start..stop
ZmPrx40 513 0 18..317 22..320
ZmPrx134 513 0 18..317 22..320
SiPrx44 505 0 1..317 2..320
OsPrx92 438 2.36e-156 1..317 1..314
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 58274504..58274713 208 N° 2 58274210..58274407 196 N° 3 58273915..58274074 158 N° 4 58273328..58273713 384
complement(join(58273328..58273713,58273915..58274074,58274210..58274407,5827450 4..58274713))


exon

Literature and cross-references SbPrx140 (Sobic.010G245300.1 [2.1] / Sb10g028460 [1.4])
Literature JGI
DNA ref. Phytozome 12:   chromosome_10 (58274713..58273328)
Protein sequence: SbPrx140 (Sobic.010G245300.1 [2.1] / Sb10g028460 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   317 (296)
PWM (Da):   %s   33715.52 (31430.2) Transmb domain:   %s   i7-29o
PI (pH):   %s   4.67 (4.52) Peptide Signal:   %s   cut: 22 range:22-317
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MRRLQLLAAVFLLAFTPMAAAKPQLRPDYYAGVCPNLESIVRGAV
QQSVALSPLSAPATLRLFFHDCAVRGCDASVMLINPAGDDEWRSLDGMTLKLEGFSTVMNAKAAVDSDPQCRNRVSCADILALAARDSVFLSGGPDYTVELGRFDGRVSTCGSVVVPHGSFDLDQLNAFFSGLGLNQTDMIALSG
GHTIGAASCGFFAYRVGEDPAMDPGLAQELLGRCPGDGPAAGFAFLDSTTPLRFDNEYYRNLRGGMGVLASDQVLYADPRSRGDVERYAADQDAFFGDFAAAMTRLGRVGVRTAADGEIR
CDCRFPN

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 10, 3 introns). No EST.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGGCGCCTCCAGCTCCTGGCCGCCGTCTTCCTGCTCGCGTTCACGCCGATGGCGGCGGCCAAGCCGCAGCTGAGGCCGGACTACTACGCCGGCGTCTGCCCGAACCTCGAGAGCATT
GTCCGCGGCGCCGTGCAGCAGTCCGTGGCGCTCTCGCCGCTCTCCGCCCCGGCCACGCTCCGCCTCTTCTTCCACGACTGCGCCGTCCGGGTACGTGCCATTAATCATTATAGGAGCATT
ACTGATGCTGCCGATCGTCAGAGCTTGGGATCGTTGATTCGCCACTCTTGTGATCTGTGAATTAAGGGGGCTGCGACGCGTCGGTGATGCTGATCAACCCTGCCGGCGACGACGAGTGGC
GGAGCCTCGACGGCATGACGCTGAAGCTGGAGGGCTTCAGCACGGTGATGAACGCCAAGGCGGCGGTGGACAGCGACCCGCAGTGCCGGAACAGGGTGTCCTGCGCCGACATCCTCGCCC
TCGCCGCCAGGGATTCCGTGTTCCTGGTAAGTGCGCGAACGGCGAACACCAAGTCATGCACCACGCATGCTGCTCTGCTCCTCGATTGCTTTCGTTCTCGATCGAGCTGATCGTGACTGT
CGTCTCTCTCGCGTGAACACACGTACGTACGGCCGCCGCAGAGAGCGGAGGGCCAGACTACACGGTGGAGCTGGGCAGGTTCGACGGCAGGGTGTCGACTTGCGGCAGCGTCGTGGTTCC
CCATGGCTCGTTCGACCTCGACCAGCTCAACGCCTTCTTCTCCGGCCTCGGCCTCAACCAGACCGACATGATCGCGCTCTCAGGTACAAATATCCACGCGCACGTGTGCATGCATATATA
TACAAATGTGTCAGCTGCTAGCTAGTGGAACACGCCAAGAGCATGCATGCATGCATGCTGCCGTGTTTAGTTTACTACTACTACTACTACTACTAGGAGCATCCTGCACCATTGCAGTAA
TGCATGCTCGTCGCTAACGGCCGTTCTTGCAATAATGCAAGCAGGGGGGGTCACACGATCGGCGCGGCGTCGTGCGGCTTCTTCGCGTACCGGGTGGGCGAGGATCCGGCCATGGACCCG
GGGCTCGCGCAGGAGCTCCTCGGCCGCTGCCCCGGGGACGGGCCGGCGGCAGGGTTCGCGTTCCTGGACAGCACGACGCCGCTGCGGTTCGACAACGAGTACTACCGGAACCTGCGCGGC
GGGATGGGGGTCCTGGCCTCCGACCAGGTGCTGTACGCCGACCCGAGGTCCCGCGGCGACGTCGAGCGCTACGCGGCGGACCAGGACGCCTTCTTCGGCGACTTCGCCGCCGCCATGACA
AGGCTCGGCAGGGTCGGGGTCCGCACGGCGGCCGACGGCGAGATACGCTGCGACTGCAGGTTCCCCAACTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGGCGCCTCCAGCTCCTGGCCGCCGTCTTCCTGCTCGCGTTCACGCCGATGGCGGCGGCCAAGCCGCAGCTGAGGCCGGACTACTACGCCGGCGTCTGCCCGAACCTCGAGAGCATT
GTCCGCGGCGCCGTGCAGCAGTCCGTGGCGCTCTCGCCGCTCTCCGCCCCGGCCACGCTCCGCCTCTTCTTCCACGACTGCGCCGTCCGGGGCTGCGACGCGTCGGTGATGCTGATCAAC
CCTGCCGGCGACGACGAGTGGCGGAGCCTCGACGGCATGACGCTGAAGCTGGAGGGCTTCAGCACGGTGATGAACGCCAAGGCGGCGGTGGACAGCGACCCGCAGTGCCGGAACAGGGTG
TCCTGCGCCGACATCCTCGCCCTCGCCGCCAGGGATTCCGTGTTCCTGAGCGGAGGGCCAGACTACACGGTGGAGCTGGGCAGGTTCGACGGCAGGGTGTCGACTTGCGGCAGCGTCGTG
GTTCCCCATGGCTCGTTCGACCTCGACCAGCTCAACGCCTTCTTCTCCGGCCTCGGCCTCAACCAGACCGACATGATCGCGCTCTCAGGGGGTCACACGATCGGCGCGGCGTCGTGCGGC
TTCTTCGCGTACCGGGTGGGCGAGGATCCGGCCATGGACCCGGGGCTCGCGCAGGAGCTCCTCGGCCGCTGCCCCGGGGACGGGCCGGCGGCAGGGTTCGCGTTCCTGGACAGCACGACG
CCGCTGCGGTTCGACAACGAGTACTACCGGAACCTGCGCGGCGGGATGGGGGTCCTGGCCTCCGACCAGGTGCTGTACGCCGACCCGAGGTCCCGCGGCGACGTCGAGCGCTACGCGGCG
GACCAGGACGCCTTCTTCGGCGACTTCGCCGCCGCCATGACAAGGCTCGGCAGGGTCGGGGTCCGCACGGCGGCCGACGGCGAGATACGCTGCGACTGCAGGTTCCCCAACTGA

Retrieve as FASTA