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Entry information : SbPrx52 (Sobic.003G120900.1 [2.1] / SB03G010230 [1.4])
Entry ID 2766
Creation 2008-10-17 (Christophe Dunand)
Last sequence changes 2008-10-17 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx52 (Sobic.003G120900.1 [2.1] / SB03G010230 [1.4])
Name (synonym) SbPrx52 (Sobic.003G120900.1 [2.1] / SB03G010230 [1.4])
Class Class III peroxidase    [Orthogroup: Prx039]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx52
start..stop		 S start..stop
SiPrx10 669 0 1..347 1..347
ZmPrx46 631 0 1..347 1..353
BdiPrx53 593 0 1..345 1..346
TaPrx170-1B 584 0 8..345 9..348
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '2766' 'complement(join(11064605..11065026,11065448..11065613,11065821..11066012,11066204..11066467))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 11066204..11066467 262 N° 2 11065821..11066012 190 N° 3 11065448..11065613 164 N° 4 11064605..11065026 420
complement(join(11064605..11065026,11065448..11065613,11065821..11066012,1106620 4..11066467))


exon

Literature and cross-references SbPrx52 (Sobic.003G120900.1 [2.1] / SB03G010230 [1.4])
Literature Plant Genome Database.
DNA ref. Phytozome 12:   chromosome_3 (11066467..11064605)
Cluster/Prediction ref. PlantGDB:   SbGSStuc11-12-04.57315.1
Protein sequence: SbPrx52 (Sobic.003G120900.1 [2.1] / SB03G010230 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   347 (324)
PWM (Da):   %s   38057.39 (35718.1) Transmb domain:   %s   i2-24o
PI (pH):   %s   7.03 (7.03) Peptide Signal:   %s   cut: 24 range:24-347
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASINIVLGAIFIASFYLSGSLAFPPGHDEGAHPIGNGPISGLST
DYYKFTCPQADEIVVPILKKAIAKEPRIAASLLRLLFHDCFVQGCDASVLLDDAEEVVSEKKAIPNKNSIRGFEVIDEIKAALEEACPNTVSCADTIALAARGSTVLSGGPYWELPLGRRDSKTANMKLANKNLPPPNATLHRLIKFFQRQGLDKVDLVALSG
SHTIGKARCVSFKQRLYNQHRDNRPDNTLEKSFYHTLASACPHTGGDDNIRSLDFVSPSQFDNSYYKLILEGKGLLNSDEVLWTGKDPEIAGLVKSYAENEQLFFEHYVNSIIKMGNINP
LMGYNGEIRKNCHRVNQDI

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 3, 3 introns). No EST.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTCAATCAATATAGTTCTTGGTGCAATTTTCATTGCTTCCTTCTACTTATCTGGCTCCCTTGCCTTCCCTCCTGGTCACGATGAGGGAGCCCATCCAATTGGAAATGGTCCAATC
TCAGGTCTTTCTACAGATTACTACAAGTTCACATGCCCACAAGCCGATGAGATTGTGGTGCCCATACTAAAGAAGGCTATTGCAAAGGAACCACGCATAGCTGCTTCCCTTCTCAGGCTC
CTGTTTCATGACTGCTTTGTTCAGGTTAGCACAGTTCAATTTCATTTCAATTTCATCCAGAATAAACAAAAGTCATCCGTCAGTCAGCCACCATGCATGGTTCACCCATGTGTTGGAAGT
TGAACATTGTTGAGTGCAAGAACCATGATTTCATGTTCTCTAGTCAATAATCTCAATTGTCTCGTGGTTTATGTAGTTATGTGATGAAATTGCAGGGGGATGTGATGCATCAGTTCTTTT
GGATGACGCTGAGGAAGTTGTAAGTGAGAAAAAAGCTATTCCCAATAAGAATTCTATTAGGGGATTTGAGGTTATAGACGAGATCAAAGCTGCACTTGAGGAAGCATGTCCGAATACAGT
GTCTTGTGCTGACACTATCGCCCTAGCAGCCAGAGGTTCAACAGTACTGGTAAATTTCTCTACATTCAAGTGACAAAAACCTGCACTAGTTACAGAAGAGAAAATATACAGGATTTCTCA
CAAAAAATTGTTTTATTTTCTTTAATAAAAAGACTAAAAGCTGGTAGTCTCAAGCAAAATTTAATTAAGATTTTCCCTAAAAAACTTAATCTAGGTCCACTTGGTACATAATCAATATAA
TCTTATCACCTGACAGAGAGTGGTGGACCATATTGGGAACTTCCATTAGGAAGGAGGGACTCAAAGACAGCAAACATGAAGCTAGCAAACAAGAACCTTCCTCCACCAAATGCAACACTA
CATCGTCTTATCAAGTTCTTCCAAAGGCAAGGACTGGACAAGGTGGACCTTGTTGCATTATCAGGTATAGTACTGGCACATCTTAATGCTCAAATTATTTTTTTTTCAAAAACACGTAGG
GAAACCGAGTGTCATTGTATTGAGAAGATTGAAAACCCTTATACAAAAGGGCCACACAACGAAAAGGCACATGCACACACACACAACAACCAACACCTCTACTGATATATTCAATGCTAA
AAAAACACTGATATGATATAAAATAGTTAATGGAATTGGTTCAGTTGTACAGAATGTCTTCGATTTTCCTTGTTATAAGCTTAGGGCTGAAAGTATAGCAAGAAAAACATTGTATAGGAC
ATAGTATAAATGCATCACTATCATCAGCAAGAATATCTGTTAGACAACAATGGAAAATAAATAGTATGTTGCTATTGGGTCTGCATATTCTTATCTTCCTAAAGAGTTTATTTTTACACT
GACAGGAGAAGCCACACCATTGGAAAGGCCAGATGTGTGAGTTTCAAACAACGACTCTACAATCAGCATAGAGATAACAGACCAGACAACACACTAGAAAAAAGTTTCTATCACACATTG
GCATCGGCGTGCCCACACACTGGTGGTGATGACAACATAAGGTCCCTAGATTTTGTCAGCCCTTCGCAATTTGACAACAGCTATTATAAGCTGATATTGGAGGGAAAAGGGCTCCTTAAT
TCAGATGAAGTTTTGTGGACAGGAAAAGACCCCGAAATAGCAGGTCTAGTAAAAAGTTATGCAGAAAACGAGCAACTATTCTTTGAACATTATGTGAATTCAATAATCAAAATGGGGAAC
ATAAATCCCCTCATGGGTTACAATGGAGAAATCCGCAAGAACTGCCATAGGGTTAATCAGGATATCTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTCAATCAATATAGTTCTTGGTGCAATTTTCATTGCTTCCTTCTACTTATCTGGCTCCCTTGCCTTCCCTCCTGGTCACGATGAGGGAGCCCATCCAATTGGAAATGGTCCAATC
TCAGGTCTTTCTACAGATTACTACAAGTTCACATGCCCACAAGCCGATGAGATTGTGGTGCCCATACTAAAGAAGGCTATTGCAAAGGAACCACGCATAGCTGCTTCCCTTCTCAGGCTC
CTGTTTCATGACTGCTTTGTTCAGGGATGTGATGCATCAGTTCTTTTGGATGACGCTGAGGAAGTTGTAAGTGAGAAAAAAGCTATTCCCAATAAGAATTCTATTAGGGGATTTGAGGTT
ATAGACGAGATCAAAGCTGCACTTGAGGAAGCATGTCCGAATACAGTGTCTTGTGCTGACACTATCGCCCTAGCAGCCAGAGGTTCAACAGTACTGAGTGGTGGACCATATTGGGAACTT
CCATTAGGAAGGAGGGACTCAAAGACAGCAAACATGAAGCTAGCAAACAAGAACCTTCCTCCACCAAATGCAACACTACATCGTCTTATCAAGTTCTTCCAAAGGCAAGGACTGGACAAG
GTGGACCTTGTTGCATTATCAGGAAGCCACACCATTGGAAAGGCCAGATGTGTGAGTTTCAAACAACGACTCTACAATCAGCATAGAGATAACAGACCAGACAACACACTAGAAAAAAGT
TTCTATCACACATTGGCATCGGCGTGCCCACACACTGGTGGTGATGACAACATAAGGTCCCTAGATTTTGTCAGCCCTTCGCAATTTGACAACAGCTATTATAAGCTGATATTGGAGGGA
AAAGGGCTCCTTAATTCAGATGAAGTTTTGTGGACAGGAAAAGACCCCGAAATAGCAGGTCTAGTAAAAAGTTATGCAGAAAACGAGCAACTATTCTTTGAACATTATGTGAATTCAATA
ATCAAAATGGGGAACATAAATCCCCTCATGGGTTACAATGGAGAAATCCGCAAGAACTGCCATAGGGTTAATCAGGATATCTAG

Retrieve as FASTA