Entry information : SbPrx[P]98 (SB06G033846 [1.4])
Entry ID 2767
Creation 2008-10-17 (Christophe Dunand)
Last sequence changes 2014-08-05 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2014-08-05 (Christophe Dunand)
Peroxidase information: SbPrx[P]98 (SB06G033846 [1.4])
Name (synonym) SbPrx[P]98 (SB06G033846 [1.4])
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx[P]98
start..stop
S start..stop
SofPrx14 217 4e-71 1..113 46..158
SofPrx14 106 2e-28 96..162 238..303
ZmPrx58 208 7e-68 1..113 40..152
ZmPrx58 96 2e-24 96..162 232..297
ZmPrx24 201 1e-64 1..113 40..152
ZmPrx24 87 5e-21 109..162 248..300
SiPrx88 193 7e-62 1..113 42..154
SiPrx88 84 3e-20 109..162 249..301
Literature and cross-references SbPrx[P]98 (SB06G033846 [1.4])
Literature Plant Genome DAtabase
DNA ref. Phytozome 12:   chromosome_6 (61781539..61780826)
Protein sequence: SbPrx[P]98 (SB06G033846 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   162
PWM (Da):   %s   17340.57  
PI (pH):   %s   4.89
Sequence
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Send to Peroxiscan
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SFYDASCPSV EGIVRWHVAD ALRRDMGIAA GLIRIFFHDC FPQGCDASVL LSGSDSEQNL GPNETLRPEA RKLIDDIRAA VHAACGPTVS CADITTLATR DAVVANAAQV LDVRTPDALD 
NKYYCLDLIA KQGLFKSDQG LMSDGNTNRT ATRYALNQAA FF 

Retrieve as FASTA  
Remarks Pseudogene sequence from genomic. Incorrect prediction from Phytozome (chromo 6). PS is not complete, VALS is missing, 3'end is missing and two or three frame shift (SCADIL)). No EST.
DNA
Send to BLAST
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AGCTTCTACG ACGCGTCCTG CCCCTCCGTA GAGGGCATCG TGCGCTGGCA CGTCGCCGAC GCCCTCCGCC GCGACATGGG CATCGCCGCC GGCCTCATCC GCATCTTCTT CCACGACTGC  TTCCCGCAGG TACGTATGGT CTTGCATGGA CCAGTACGTC GTCGTTGGTG TGTGCTGATG CTAATGGCAA TGCAAATTTC ATTAGGGCTG CGACGCGTCC GTCCTCCTGT CGGGTTCCGA  CAGCGAGCAG AATCTGGGAC CCAACGAGAC GCTCCGTCCC GAGGCGCGGA AGCTCATCGA CGACATCCGC GCCGCCGTCC ACGCCGCCTG CGGGCCCACG GTGTCCTGCA TGCnnGCCGA  CATCATCACG CTAGCCACCA GGGACGCCGT CGTCGCGGTA CGTAAGTCCG TCCATCGCCG GACCACGTCC ACGTACAATG CAGCTGCTGC ATGCTGACGA CAAAAAAGCA ATAATGCCCT  TGCATGCAGT CTGGAACGCG GCGCAGGTGC TGGACGTGCG CACGCCCGAC GCCTTGGACA ACAAGTACGn nTACTGCTTG GACCTGATCG CGAAGCAGGG GCTGTTCAAG TCGGACCAGG 
GCCTCATGAG CGACGGCAAC ACGTAnAACA ACCGCACCGC CACGCGCTAC GCGCTGAACC AGGCCGCCTT CTTCGCATCT GCAGGCCACA GCGACGAGGG GCTCGCGGCC GACGCGTGA 

Retrieve as FASTA