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Entry information : NcaePrx42_Calamine
Entry ID 2780
Creation 2008-06-19 (Christophe Dunand)
Last sequence changes 2017-10-23 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2017-10-23 (Christophe Dunand)
Peroxidase information: NcaePrx42_Calamine
Name NcaePrx42_Calamine
Class Class III peroxidase    [Orthogroup: Prx012]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Noccaea
Organism Noccaea caerulescens (Thlaspi caerulescens)    [TaxId: 107243 ]
Cellular localisation N/D
Tissue type Shoots
Inducer Metals
Repressor N/D
Best BLASTp hits
Perox score E-value NcaePrx42_Calamine
start..stop		 S start..stop
AtPrx42 674 0 1..331 1..330
TsPrx42 674 0 1..331 1..331
ThPrx42 674 0 1..331 1..331
AlyPrx42 673 0 1..331 1..330
Literature and cross-references NcaePrx42_Calamine
Literature Rigola,D., Fiers,M., Vurro,E. and Aarts,M. Thlaspi caerulescens ESTs collection: a genomic resource to study metal homeostasis, tolerance and hyperaccumulation, Unpublished (2005)
Protein ref. GenBank:   JAU29629.1
EST ref. GenBank:   DN923980 [3' end]  DN926410 [Fragment]
Protein sequence: NcaePrx42_Calamine
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   331 (308)
PWM (Da):   %s   37191.03 (34870.9)  
PI (pH):   %s   7.78 (7.82) Peptide Signal:   %s   cut: 24 range:24-331
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MGGKGVMMVA ILCLWALSAT SEAVVTEGEP GLMMNFYRDT CPQAEDIIRE QVKLLYKRHK NTAFSWLRNI FHDCAVESCD ASLLLDSTRR ELGEKEHDRS FGLRNFRYIE EIKEALEREC  PGVVSCSDIL VLSAREGIEA VGGPHIPLKT GRRDGLKSRT DMLESYLPDH NESISVVLDK FKSIGIDAPG LVALLGSHSV GRTHCVKLVH RLYPEVDPSL NPDHVPHMLH KCPDSIPDPK 
AVQYVRNDRG TPMVLDNNYY RNILDNKGLL LVDHQLAHDK RTRPIVKKMA KDQAYFFKEF TRAIQILSEN NPLTGSKGEI RKQCNLANKN H 

Retrieve as FASTA  
Remarks Complete sequence from 9 ESTs and RNA seq. Plant treated with 10 uM ZnSO4. Strain="La Calamine"
CDS►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGAGGAA AAGGTGTGAT GATGGTGGCG ATACTCTGCC TTTGGGCACT CTCTGCAACC TCAGAAGCAG TTGTAACAGA GGGAGAGCCA GGCTTGATGA TGAACTTCTA CAGGGACACG  TGTCCTCAGG CCGAAGACAT CATCCGTGAA CAAGTCAAAC TCCTCTACAA ACGCCACAAG AACACTGCTT TCTCTTGGCT CCGTAACATC TTCCACGACT GCGCCGTTGA GTCATGCGAT  GCGTCGCTTT TGCTGGATTC GACAAGAAGA GAGCTTGGAG AGAAAGAGCA CGATAGGAGT TTCGGTCTGA GAAACTTCAG ATACATTGAA GAGATAAAGG AAGCTCTTGA GAGAGAGTGT  CCCGGTGTTG TCTCATGTTC GGACATCCTC GTCTTGTCCG CAAGAGAAGG CATCGAAGCA GTGGGAGGAC CACATATTCC GTTGAAGACA GGAAGGAGAG ATGGACTGAA AAGCAGGACT  GATATGCTTG AGTCGTACCT TCCCGACCAC AACGAGAGTA TCTCCGTCGT TCTTGACAAG TTCAAATCCA TCGGAATCGA CGCTCCCGGC CTCGTCGCCC TCCTCGGATC ACACAGCGTG  GGAAGAACTC ACTGTGTGAA GTTGGTGCAC CGTTTGTACC CTGAGGTGGA CCCATCTTTG AACCCGGACC ACGTCCCTCA CATGTTACAC AAGTGTCCTG ACTCGATCCC TGACCCAAAA  GCGGTCCAGT ACGTGCGTAA CGACCGTGGT ACTCCCATGG TGCTAGACAA CAACTACTAC CGTAACATCC TAGACAACAA GGGCTTGCTC CTTGTGGACC ACCAGCTCGC ACACGACAAA  CGGACCAGAC CAATTGTCAA AAAGATGGCT AAGGACCAGG CTTACTTCTT CAAGGAGTTC ACTAGAGCGA TCCAGATCTT GTCCGAGAAC AACCCTTTGA CTGGTTCCAA GGGTGAGATC 
AGGAAGCAGT GTAATCTCGC CAACAAGAAC CATTGA 

Retrieve as FASTA  
cDNA►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TACTTGCGTT ATTTTACTAT AATCTCCAAA TTAATTAATT TTAGATAAAG ATGAAAACTC TATTTTCCTT TATTTAAGGA GGCTGCATTG CTTGCTCAGT GACTCAACTC AAGAGTGGTG  TAGTGAGAGA GAATACGAAG AAGAAGAAGA AAGAGAGAAA AAATGGGAGG AAAAGGTGTG ATGATGGTGG CGATACTCTG CCTTTGGGCA CTCTCTGCAA CCTCAGAAGC AGTTGTAACA  GAGGGAGAGC CAGGCTTGAT GATGAACTTC TACAGGGACA CGTGTCCTCA GGCCGAAGAC ATCATCCGTG AACAAGTCAA ACTCCTCTAC AAACGCCACA AGAACACTGC TTTCTCTTGG  CTCCGTAACA TCTTCCACGA CTGCGCCGTT GAGTCATGCG ATGCGTCGCT TTTGCTGGAT TCGACAAGAA GAGAGCTTGG AGAGAAAGAG CACGATAGGA GTTTCGGTCT GAGAAACTTC  AGATACATTG AAGAGATAAA GGAAGCTCTT GAGAGAGAGT GTCCCGGTGT TGTCTCATGT TCGGACATCC TCGTCTTGTC CGCAAGAGAA GGCATCGAAG CAGTGGGAGG ACCACATATT  CCGTTGAAGA CAGGAAGGAG AGATGGACTG AAAAGCAGGA CTGATATGCT TGAGTCGTAC CTTCCCGACC ACAACGAGAG TATCTCCGTC GTTCTTGACA AGTTCAAATC CATCGGAATC  GACGCTCCCG GCCTCGTCGC CCTCCTCGGA TCACACAGCG TGGGAAGAAC TCACTGTGTG AAGTTGGTGC ACCGTTTGTA CCCTGAGGTG GACCCATCTT TGAACCCGGA CCACGTCCCT  CACATGTTAC ACAAGTGTCC TGACTCGATC CCTGACCCAA AAGCGGTCCA GTACGTGCGT AACGACCGTG GTACTCCCAT GGTGCTAGAC AACAACTACT ACCGTAACAT CCTAGACAAC  AAGGGCTTGC TCCTTGTGGA CCACCAGCTC GCACACGACA AACGGACCAG ACCAATTGTC AAAAAGATGG CTAAGGACCA GGCTTACTTC TTCAAGGAGT TCACTAGAGC GATCCAGATC  TTGTCCGAGA ACAACCCTTT GACTGGTTCC AAGGGTGAGA TCAGGAAGCA GTGTAATCTC GCCAACAAGA ACCATTGAGG TTGCGATGAG TGAGAAAGAG AGAGCCGCTT TGTGTTTGGG  TTCTCTCTGC ACTTATTTGG CACCCAGCCA AGATGAATAA ATGTTTTAAG AAGTTAAAAT GAAATGAAGG GTAATGATGA CGATGAATGA TGTATCATGG TGGTGACCAC ATGCACTCCC  TCTTCTTTTT GTGTGTTGCT GTTTTAGCCT TGATGCTTTA ATTGTGATGG TAGTGGTGAG TTAATTAATC TAAATGTTGT TTCTTTGTTT ATTTTGGGGT TTTGTGGTTT TGTGGTGGGG 
TTGATGGAAT GGATGTATGA TATGATGGAT GGGTGTTTCG GTATCATGTA GTATGATGAT GTAATAATGA TAAGTGAATG GTGGAATCGT ACCTTAATCT TTTATTTAAA AAAAAAAA 

Retrieve as FASTA