Entry information : MtPrx87(Medtr1g086490.1[4.0] / Medtr1g086490.1[3.5] / Medtr1g106190.1[3.0])
Entry ID 2796
Creation 2006-08-16 (Christophe Dunand)
Last sequence changes 2006-08-16 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2019-11-06 (Christophe Dunand)
Peroxidase information: MtPrx87(Medtr1g086490.1[4.0] / Medtr1g086490.1[3.5] / Medtr1g106190.1[3.0])
Name MtPrx87(Medtr1g086490.1[4.0] / Medtr1g086490.1[3.5] / Medtr1g106190.1[3.0])
Class Class III peroxidase    [Orthogroup: Prx014]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value MtPrx87
start..stop
S start..stop
MtPrx65 645 0 1..340 1..333
GmPrx106 464 6e-166 1..340 2..319
GmPrx332 464 7e-166 4..340 5..324
GmPrx192 464 7e-166 4..340 5..324
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 38696755..38697783 1029  
complement(join(38696755..38697783))


exon

Literature and cross-references MtPrx87(Medtr1g086490.1[4.0] / Medtr1g086490.1[3.5] / Medtr1g106190.1[3.0])
Literature Lin,S., Dixon,R., May,G., Sumner,L., Gonzales,B., Cook,D., Kim,D. and Roe,B.A. Medicago truncatula BAC Clone mth2-95k24 Unpublished.
Protein ref. UniProtKB_Uniparc:   Q1RUM5
DNA ref. Phytozome 12:   chr1 (38697783..38696755)
mRNA ref. GenBank:   AC153001
Cluster/Prediction ref. Phytozome Gene 12:   31094869
Omic ref. Gene atlas:   Mtr.46036.1.S1_at Legoo:   Mtr.46036.1.S1_at
Protein sequence: MtPrx87(Medtr1g086490.1[4.0] / Medtr1g086490.1[3.5] / Medtr1g106190.1[3.0])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   342 (317)
PWM (Da):   %s   37238.89 (34633.4) Transmb domain:   %s   i7-29o
PI (pH):   %s   8.9 (8.73) Peptide Signal:   %s   cut: 26 range:26-342
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MVKMHAILSI ATLVIVILSV STTLASSTSL KYGFYKTTCP SAEAIVRRAV NKAVSLNPGI TAGLIRMHFH DCFVRGCDGS VLLDSIPGIR SERDHPANNP SLRGFEVINE AKAQIEAACP  KTVSCADILA FAARDSARKV SGGRIDYSVP SGRRDGRVSI FDEVTQNLPP PTFSAEQLID NFDRKGLSVD EMVTLSGAHS IGVSHCSSFS KRLYSFNATF PQDPSMDPDF ARLLRSKCPP 
PQSQQSQSQI QNLDSTVAFD GSTPNDLDNM YYKRLKNNRG LLTSDQILVN SGLTKRMVLK NARHAAIWNV KFAKAMVHMG NLDVLTGSQG EIREYCSVVN FI 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 7, intron less) and cDNA. No EST. Also from three other accessions AC136840, AC124961 and AC155892.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTTAAAA TGCATGCAAT ACTCTCTATA GCTACCTTGG TTATAGTTAT TCTCTCAGTT TCAACAACAT TGGCATCATC AACATCTTTG AAGTATGGTT TCTACAAGAC AACATGTCCA  TCCGCGGAGG CAATTGTTAG AAGAGCTGTA AACAAAGCTG TTTCACTCAA CCCCGGCATC ACTGCTGGTT TGATTAGAAT GCATTTTCAT GATTGCTTTG TCAGAGGATG TGATGGTTCT  GTTTTATTAG ATTCCATACC AGGTATTCGA TCTGAGAGAG ACCATCCTGC AAACAATCCA AGTTTACGTG GCTTTGAAGT AATCAACGAA GCTAAGGCAC AAATAGAGGC TGCATGTCCT  AAAACGGTGT CCTGTGCAGA CATTCTTGCT TTTGCAGCTC GAGACAGTGC TCGCAAAGTT AGTGGCGGCA GAATAGACTA CTCAGTACCA TCAGGACGCA GAGATGGTCG AGTGTCTATC  TTCGACGAAG TCACACAAAA TTTACCACCA CCAACTTTCA GTGCGGAGCA ACTTATCGAT AATTTTGATA GAAAAGGTTT GTCAGTAGAT GAAATGGTTA CACTTTCTGG TGCTCATTCT  ATTGGTGTCT CACATTGTTC TTCATTCTCA AAACGATTAT ACTCTTTCAA TGCAACTTTT CCTCAAGATC CTTCTATGGA CCCTGACTTT GCTAGGTTGT TGAGATCCAA GTGTCCGCCA  CCACAGTCAC AACAATCACA GTCACAGATA CAGAACCTAG ACTCAACAGT GGCGTTTGAT GGTTCCACGC CTAATGATTT GGACAACATG TACTATAAGA GGTTGAAGAA TAACCGTGGT  TTATTAACTT CGGATCAAAT ATTGGTTAAT AGTGGCTTAA CTAAGAGAAT GGTGTTAAAA AATGCCAGAC ATGCTGCAAT CTGGAATGTG AAGTTTGCCA AGGCAATGGT ACATATGGGT 
AACTTGGATG TGTTGACAGG TTCTCAAGGT GAGATTAGGG AGTACTGCAG CGTTGTTAAT TTTATTTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTTAAAA TGCATGCAAT ACTCTCTATA GCTACCTTGG TTATAGTTAT TCTCTCAGTT TCAACAACAT TGGCATCATC AACATCTTTG AAGTATGGTT TCTACAAGAC AACATGTCCA  TCCGCGGAGG CAATTGTTAG AAGAGCTGTA AACAAAGCTG TTTCACTCAA CCCCGGCATC ACTGCTGGTT TGATTAGAAT GCATTTTCAT GATTGCTTTG TCAGAGGATG TGATGGTTCT  GTTTTATTAG ATTCCATACC AGGTATTCGA TCTGAGAGAG ACCATCCTGC AAACAATCCA AGTTTACGTG GCTTTGAAGT AATCAACGAA GCTAAGGCAC AAATAGAGGC TGCATGTCCT  AAAACGGTGT CCTGTGCAGA CATTCTTGCT TTTGCAGCTC GAGACAGTGC TCGCAAAGTT AGTGGCGGCA GAATAGACTA CTCAGTACCA TCAGGACGCA GAGATGGTCG AGTGTCTATC  TTCGACGAAG TCACACAAAA TTTACCACCA CCAACTTTCA GTGCGGAGCA ACTTATCGAT AATTTTGATA GAAAAGGTTT GTCAGTAGAT GAAATGGTTA CACTTTCTGG TGCTCATTCT  ATTGGTGTCT CACATTGTTC TTCATTCTCA AAACGATTAT ACTCTTTCAA TGCAACTTTT CCTCAAGATC CTTCTATGGA CCCTGACTTT GCTAGGTTGT TGAGATCCAA GTGTCCGCCA  CCACAGTCAC AACAATCACA GTCACAGATA CAGAACCTAG ACTCAACAGT GGCGTTTGAT GGTTCCACGC CTAATGATTT GGACAACATG TACTATAAGA GGTTGAAGAA TAACCGTGGT  TTATTAACTT CGGATCAAAT ATTGGTTAAT AGTGGCTTAA CTAAGAGAAT GGTGTTAAAA AATGCCAGAC ATGCTGCAAT CTGGAATGTG AAGTTTGCCA AGGCAATGGT ACATATGGGT 
AACTTGGATG TGTTGACAGG TTCTCAAGGT GAGATTAGGG AGTACTGCAG CGTTGTTAAT TTTATTTAA 

Retrieve as FASTA