View Redoxidase 2824

Entry information : MtPrx94 (Medtr4g030890.1[4.0] / / Medtr4g031060.1 and Medtr4g030890.1 [3.5] / Medtr4g032010.1[3.0])

Entry ID	2824
Creation	2006-03-03 (Christophe Dunand)
Last sequence changes	2013-12-31 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2014-07-29 (Christophe Dunand)

Peroxidase information: MtPrx94 (Medtr4g030890.1[4.0] / / Medtr4g031060.1 and Medtr4g030890.1 [3.5] / Medtr4g032010.1[3.0])

Name (synonym)

MtPrx94 (Medtr4g030890.1[4.0] / / Medtr4g031060.1 and Medtr4g030890.1 [3.5] / Medtr4g032010.1[3.0])

Class

Class III peroxidase [Orthogroup: Prx020]

Taxonomy

Eukaryota Viridiplantae Streptophyta Fabaceae Medicago

Organism

Medicago truncatula (barrel medic) [TaxId: 3880 ]

Cellular localisation

N/D

Tissue types

Coleoptiles
Roots

Inducer

Methyl jasmonate treatment

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	MtPrx94 start..stop	S start..stop
MtPrx95	576	0	68..415	1..343
LjPrx33	564	0	68..403	1..335
GmPrx48	563	0	78..413	5..342
PvPrx17	559	0	86..415	19..347

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	10498450..10498884	433	N° 2	10499610..10499801	190	N° 3	10500264..10500884	619
join(10498450..10498884,10499610..10499801,10500264..10500884)

Literature and cross-references MtPrx94 (Medtr4g030890.1[4.0] / / Medtr4g031060.1 and Medtr4g030890.1 [3.5] / Medtr4g032010.1[3.0])

Literature	Achnine,L., He,X.-Z., Scott,A.D., May,G.D. and Dixon,R.A. Medicago truncatula Methyl Jasmonate-Elicited Root Cell Suspension Culture Expressed Sequence Tags from the Samuel Roberts Noble Foundation - Center for Medicago Genomics Research.
DNA ref.	Phytozome 12: chr4 (10498450..10500884)
EST ref.	GenBank: DY616897
Cluster/Prediction ref.	Phytozome Gene 12: 31114039
Omic ref.	Gene atlas: Mtr.6992.1.S1_at

Protein sequence: MtPrx94 (Medtr4g030890.1[4.0] / / Medtr4g031060.1 and Medtr4g030890.1 [3.5] / Medtr4g032010.1[3.0])

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	415
PWM (Da):	46191.42	Transmb domain:	i71-93o
PI (pH):	9.38

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MGGNIIAKLSTNYCMTHSTIAHSIFSSTIKYPSNQRGKLQNLMSSVSSFHTTNKHTHSSKQNNKRSTMFQIPNNRPIITMFLFLIFIINIITVTSSSSDLRPGFYSKTCPKAETIVRDVM
RKALIREPRSVASVMRLQFHDCFVNGCDGSVLLDDTPTMLGEKLALSNINSLRSFEVVDEVKEALEKACPGVVSCADIIIMASRDAVALTGGPDWEVRLGRLDSLTASQEDSDNIMPSPR
ANASTLIDLFQRFNLTVKDLVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPALDPAFRLELDKLCPLDVDQNKTGNLDSTPVIFDNQYFKDLVGGRGFLNSDQTLFTYPQTKGLVRFYS
RDQSEFFKAFVKGMLKMGDLQSGRPGEVRRNCRVVNDRFAYVLFQHKMQKNVKSI*

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 4, introns 1 and 2) and 4 ESTs (DY616897, DY616721, DW018611, CX533163). Contains a very long PS.

Promoter►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

TTGGGCGTCA ACTTTGCAGA TCCGTAAGCA TGGGTATTTC GGTGAGTTAG GTTTTATCAT ATTATTTGTA GGCATTTTGC TGTCGTATGC TATTAACTTG GGTGCTTTGA GTTTGTTCGC AGATTCATCC TTTAACGTTT TTAGCGATAT TTGTATTTGA TATACTCTAT CAATTTGAAT GAATGAATAT CGTTTTAATT TTGTCAAAAA AAAAATCGTG GGAAAGTTCA AGAATATTGA GCATCTTCCA AGAGGGAGAT AAAAAACATG AATTGAGTGA AATTTTTATG AGACTTCTAG AGTTAGTCCA AATGTAGTTT AAGTCTGTAA CTTGATTATT TTCTCTAAAA ATATGATTAA CTTAGACAAT TCTAAAACAA ACAAAAAAAA AAGTTTTCTT TCTGTTCAAA TTGAACACTT ATTCTGTTGC TTTTGAATTT GATCATTCAC TAAACAATCT TAAATCAGAT TTCACATATA CTTTTACTAA ACTATTAATT AGTCACACAT TTTCTCAAAT ATCAATAAAA GGATTTGCAA ATTTAGGAAG TTGTGTTTAG TGCAAATTAT CCTAGTTGCA AATAAAATCC AAAAACAATA AATTCCTAGT TGCAACTTGT ACGTTGCTTT CTTTCATATG AGGGATGGTA TTTCAATAAT TTTGTTAACG TCCAAAAAGA ACGAATTAAG AGCTCTTTTT ATACCACACA ATTTCCAAAA ATAAAAAAAT CAGATGCACA ATTTTAAGTG CACAAAAAAC ATTGTTTTTT GTCATGCTTG CCATTGTAAA CGATTTTTAA TATGTCTTCG TGAGCTTAGC TCAATTGGTA TGGACAATGC ATAAAATATG CAAAGTCCGG GGTTCGAATC ATGGTCACCA CAAAAAAAAA AAGATTTTTA ATAGTTAATC CTCAATTATA CTACCTCTGT TCCTAAATAT AAGACCCTTT TGAAAAAAAA ATGTCTCTTT TTATAAGATC TATTTGGTTT TTCCAAATAC ATTAATTAGT TCTTTACCAA CATACCCCTA TTTATTTTAT ATCCTTTTCT TCAATCAACA TTAAATACTA TGTTAAAAAC ATACACTAGT CTTCTCTCTT AAAGGATAAA ATTGTAAAAA TAATAGTAAT TATAAACAAA TTTATTATCA CTTTCAATTT TCTTAATTCC CATTATTTTT TCAAAATGAC ATATAATTAA GGAGAGAGGT AATATTAAGG TTTTCTCTCA ATTCAAATCA TTTATTCCAT CACATTTGAA TTTGATCGTT GGTTAAAACA ATCTTAAATC AGATTTCCCA TGAAGTATTT GTTAATCAAA CTATAAATTA GTCAAACATT TCCTCAAATA CCAAGAAAAC TTTAGCAAAT TTAGGAATTT GTGTTTTAGT GCAAATTATC CTAGTTGCAA ATTAAGTCCA AAGACAATAA ATTTCTAGTT GCAACTTGTA TGCTGCTTTC TTCTTTACGG GGAATGGTAT TTCAATGATT TTATAAGAGG AATGTTATTT AAACAATTAT TTTATAGAAT AATTTGTGGG ACAATTAAAA TATACAAAAA AATATAGGTT TTGACACAAA AGCTAAAGAG AGAGAGATTT ATCATAAAAA TTGTCACAGA ATGAGAACCA ATTAATTGCT CTTTTTGTCC CACACAATTT CCCAAAAAAA GTTGATCTAA TGCAAAAAAA AACATCTTTT ATTTTTCATC TTCAAAACAG TGCATCCGAA GAAAATCATG ATTTCTGCTC TTTCGAAATG ATGCATTCAA ACGGATTTTT TTTTTTCTTT TATGGAAGAA ACTTAAGGGG AACTTATGAA AGTCAAGGCA TATCTTAAAA GCTCGATGCT AACATAGGTG TTCATAGATC ACCCATATCA AAGAGGTTCT CATGCTGTCT CCGAGAGGTA TATCCATAAT
CTTGCAAACA AGTCATTGCT TATCAACCGA GACAACTTTC ATTAGACACA TCAAAACGGA TTTGTTTTTA TAAGAAAAAA

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGGTGGGAATATAATAGCAAAACTCTCAACCAATTATTGCATGACACATAGTACCATAGCTCACTCAATATTTTCATCTACCATTAAATATCCTTCAAATCAAAGAGGAAAGTTACAA
AACCTTATGTCTAGTGTCTCCTCTTTCCACACAACAAACAAACATACTCATAGTTCAAAACAAAACAACAAACGTAGTACCATGTTTCAGATTCCCAACAACCGACCCATTATCACCATG
TTTCTGTTTCTGATCTTCATCATAAACATCATCACAGTAACATCATCATCATCAGATCTTCGACCTGGGTTTTACTCAAAAACATGTCCAAAAGCTGAAACCATTGTCAGAGATGTTATG
AGAAAAGCTCTTATAAGAGAACCAAGAAGTGTTGCCTCTGTTATGAGACTTCAGTTTCATGATTGCTTTGTTAATATGTATGTTCTCTCTCTCTCTATTCTTTCTTACCATCAAAATTCT
ATCTTTTCAATCAGTTATCTTTTTTAAGTTACAATCTTTTCAATTACTATAAAATTTACGTTTTTCTTTTTGGTGTTTAATCTTATTAGAATATCTACTTCGATTTTTTTTTTGACAAGG
AATATCTACTTTCATGTTGCTTCAAATTACAAAATTGAATGTTTTTAGTAAGATTGAAAGCATGTAGTTTTGTAATTTGTAGATATGAGAAGTTGGTACAAGACTAAAAACAAAATTCAA
GATTATAGAACTTATTTTTATTATAATTCTCTGATCTTCAGAGGGAAGGGTTTGGTAATCTATGAAGCACGGACAATCCTCGGATTAGGCGTGTGTCGGGTCCGACACTGACACATATAA
TTACACTAAATTATGTGATTTTCTCAAGTTTTAGATGTGTCGGTGTGTCAGTGTCAGTGTGTGTCTGGTGTCCGTATCTGTATCCATGCTTCATAGCGAGTAATCCAAACTTTGACCGAG
CATTTTTCCAAAGATTTTTTTAGTTAGAATTCGAATTTGGATATTTCGAAACAATTTGTCTTTAACTAAGAGTTTAAAATTCATTAATCATTTGAGCTCAATTGTTTACTTGGATAATTA
GAGAACTAAAAAATATATTTAATTATTTTTCTATTAAAAAACTTATTTTTCTTTGGTTGAATGAGTTGTTGAATTTGTGAAGGGGTGTGATGGTTCTGTGTTGCTTGATGATACACCAAC
TATGCTTGGAGAAAAATTGGCTCTTTCAAATATAAATTCACTTAGATCATTTGAAGTTGTTGATGAGGTTAAGGAGGCATTAGAGAAAGCTTGCCCTGGAGTTGTTTCTTGTGCTGATAT
TATTATTATGGCTTCTAGAGATGCTGTAGCACTGTGGTTTGTATTTATCTCTCTATCTTTCAAAATTAAAAATTAAAAATTTATGATTTATGAATATGACTCTTCTAAAGTGATACTTTA
GTGAATAACTTCACAGATATCTCAACAGCTAATAAGAATATCAATAGTTAGTATTTTAATTTGTTATGTACATATACACGTTGAGATTACTTATTTTTGAATAAAATTATTATTTAATTT
ATGCCGTTTTCTAAGGGTGAAATGTTATGTATATTTGCATTCAAAATTTGTTGATTTTTTTTGGCTGAGTCAGTAGTAAGAACATAGGAAGATGCATGCCCTGTAGTGATATCTGTCTTT
GTTCATGTCATGAACTTACACACATCAAATATATTTATCTTATGGCTGAATTTTTTCCTTTCCAAATTCTGTTGTAAACTAGATGTGTTATTGAGACTGCATATGCAAATGTACAATTTT
TGTTTACTTTTATTGCAGACAGGAGGACCAGATTGGGAGGTGAGGTTAGGAAGATTGGACAGCTTAACAGCAAGTCAAGAAGACTCAGACAATATCATGCCAAGTCCAAGAGCCAATGCA
AGCACTCTCATTGATCTCTTCCAAAGATTCAACCTCACTGTCAAAGACCTTGTAGCACTCTCAGGATCTCACTCTATCGGCCAAGGTCGATGTTTTTCGATCATGTTTCGGCTATACAAT
CAATCAGGTAGTGGAAAACCCGACCCTGCACTTGATCCTGCTTTTAGACTAGAGCTTGACAAGCTATGCCCACTAGATGTTGACCAAAATAAGACAGGGAACCTTGACTCAACTCCCGTG
ATTTTCGATAACCAATATTTCAAGGACTTGGTTGGTGGAAGAGGATTTCTCAACTCTGATCAAACACTTTTCACTTACCCTCAAACAAAAGGGTTAGTGAGGTTCTATAGTAGAGATCAA
AGTGAGTTTTTCAAAGCATTTGTTAAAGGGATGTTGAAAATGGGTGATTTGCAGTCCGGTCGACCTGGAGAGGTTAGGAGGAATTGCAGAGTTGTGAATGATCGCTTCGCTTATGTTCTG
TTTCAACACAAGATGCAGAAAAATGTTAAATCAATCTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA