Entry information : PtAPx07 (POPTR_0005s20140 / Potri.005G179200)
Entry ID 2878
Creation 2010-04-09 (Christophe Dunand)
Last sequence changes 2010-04-09 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-07 (Qiang Li)
Peroxidase information: PtAPx07 (POPTR_0005s20140 / Potri.005G179200)
Name (synonym) PtAPx07 (POPTR_0005s20140 / Potri.005G179200)
Class Ascorbate peroxidase    [Orthogroup: APx2002]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation Chloroplastic
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtAPx07
start..stop
S start..stop
PtAPx08 711 0 18..424 1..409
MeAPx05 698 0 1..424 1..428
EguAPx08 665 0 18..424 26..446
EglAPx08 656 0 18..424 26..446
Gene structure Fichier Exons


exon

Literature and cross-references PtAPx07 (POPTR_0005s20140 / Potri.005G179200)
Literature JGI
DNA ref. Phytozome 12:   Chr05 (19542727..19539062)
Cluster/Prediction ref. JGI gene:   559250 [Incorrect prediction]
Omic ref. ePlant:   Potri.005G179200
Protein sequence: PtAPx07 (POPTR_0005s20140 / Potri.005G179200)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   424
PWM (Da):   %s   46021.65 Transmb domain:   %s   o404-423i
PI (pH):   %s   8.73
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAQYLSQLTLSPPKSQPMASLSGGAATTSRLLPSASRVRLSICSASSSLSLASSSSYSPSSLKCLRFSPLIFKDQKRSSMSTVAAASDAAQLKSAREDIKELLKSKFCHPILVRLGWHDA
GTYNKNIEEWPKRGGANGSLRFEIELKHAANA
GLVDALKLIQPIKDKYSGVTYADLFQMASAAAIEAGGPKIPMKYGRVDVSVPDECPEEGRLPDAGPPKPADHLREVFYRMGLDDEIAA
LSGAHTLGRSRPERSGWGKPETKYT
KNGPGAPGGQSWTAEWLKFDNSYFKDIKERKDEDLLVLPTDAALFEDPSFKVYAEKYAEDKEAFFKDYAEAHAKLSNLGAKFDPPEGIMLDGVAG
EKFVAAKYSSGK
RELSETMKQKIRAEYQAVGGSPDKPLQSNYFLNIIIVIAVLALLTSLLGN*

Retrieve as FASTA  
Remarks Complete sequence from genomic (11 introns). Incorrect prediction from JGI (very small last exon: 1 aa; or alternative splicing which could be confirmed by ESTs from populus hybrids: CV278216.1, CV256725.1, BP930644.1). No EST.
DNA
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CDS
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