View Redoxidase 288

Entry information : GmPrx86 (sEpa2 / Glyma12g32160.1)

Entry ID	288
Creation	2006-10-30 (Christophe Dunand)
Last sequence changes	2011-12-02 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2011-12-13 (Qiang Li)

Peroxidase information: GmPrx86 (sEpa2 / Glyma12g32160.1)

Name (synonym)

GmPrx86 (sEpa2 / Glyma12g32160.1)

Class

Class III peroxidase [Orthogroup: Prx007]

Taxonomy

Eukaryota Viridiplantae Streptophyta Fabaceae Glycine

Organism

Glycine max (soybean) [TaxId: 3847 ]

Cellular localisation

N/D

Tissue types

Floral meristems
Germinating seeds
Germinating shoots
Hypocotyls
Immature flowers
Plumules
Roots
Roots of 'Supernod' plants
Seed buds
Seedling epicotyls
Seedlings

Inducers

Bradyrhizobium inoculation
Elicitor treatment (glucan, oligosaccharides, yeast extract, Phytophthora crude extract)
Nodulation
Pathogen interaction

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	GmPrx86 start..stop	S start..stop
GmPrx12	656	0	3..326	1..324
GmPrx55	642	0	1..326	1..326
GmPrx11	639	0	1..326	1..326
LjPrx13	571	0	1..326	1..327

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	35716838..35717047	208	N° 2	35717141..35717329	187	N° 3	35717472..35717634	161	N° 4	35717920..35718338	417
join(35716838..35717047,35717141..35717329,35717472..35717634,35717920..35718338 )

Literature and cross-references GmPrx86 (sEpa2 / Glyma12g32160.1)

Literature	Chen,H. and Vierling,R.A. Molecular cloning and characterization of soybean peroxidase gene families. Plant Sci. 150 (2), 129-137 (2000).
Protein ref.	UniProtKB: Q9ZNZ5
DNA ref.	Phytozome 12: Gm12 (35716838..35718338)

Protein sequence: GmPrx86 (sEpa2 / Glyma12g32160.1)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	326 (303)
PWM (Da):	35557.06 (33051.8)	Transmb domain:	i7-29o
PI (pH):	7.5 (6.98)	Peptide Signal:	cut: 24 range:24-326

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MKMGSNFRFLSLCLLALIASTHAQLQLGFYAKSCPNAEQIVLKFV
HDHIHNAPSLAAALIRMHFHDCFVRGCDASVLLNSTTNQAEKNAPPNLTVRGFDFIDRIKSLVEAECPGVVSCADILTLSARDTIVATGGPFWKVPTGRRDGVISNLTEARDNIPAPSSNFTTLQTLFANQGLDLKDLVLLSGAH
TIGIAHCSSLSNRLFNFTGKGDQDPSLDSEYAANLKAFKCTDLNKLNTTKIEMDPGSRKTFDLSYYSHVIKRRGLFESDAALLTNSVTKAQIIELLEGSVENFFAEFATSMEKMGRINVK
TGTEGEIRKHCAFVNS

Retrieve as FASTA

Remarks

Complete sequence from genomic, 41 ESTs and 1 cDNA. (U51192).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGAAAATGGGAAGCAACTTCAGGTTTTTGAGTCTTTGCCTCTTGGCATTGATTGCATCAACCCATGCTCAACTTCAGCTTGGTTTTTATGCCAAGAGTTGCCCAAACGCTGAGCAAATC
GTTTTGAAATTTGTCCATGACCATATCCACAATGCTCCATCACTAGCAGCTGCATTGATAAGAATGCACTTCCATGACTGTTTTGTAAGGGGGTATGTGCTACAATCTTTAAGCTCCTTC
CATTTTTACTTAACAAGTACAATGTTAGATTAAAGTTAAGGAGCTAATAAGATGAAGCATTTCAGGGATGTGATGCATCAGTCCTTCTGAACTCAACAACCAATCAAGCTGAAAAGAATG
CTCCTCCAAATCTCACAGTAAGAGGCTTTGACTTCATTGACAGAATAAAGAGCCTTGTTGAGGCAGAATGCCCTGGTGTGGTCTCTTGTGCTGATATCCTCACTTTGTCTGCCAGAGACA
CTATTGTAGCCACACAGTAAGTGCTCAATTTCTATCTAGAAAAGCTTAAATATTAGTACAACTTCTGCTTCATCTTTATCTTAAATCTTAACACTTTCTTTTTGAGAACATAAATGACCA
ATTTGTATGTTTATGCCATTACTGACATTGGCTTACAGGGTGGACCATTTTGGAAAGTTCCAACAGGTCGAAGAGATGGGGTCATCTCTAACTTGACGGAAGCCAGAGATAACATTCCTG
CTCCATCTTCTAACTTTACCACCCTACAAACACTCTTTGCCAACCAAGGACTTGATTTGAAGGACTTGGTCCTGCTCTCTGTGGTACTATTTATCAAACAATTTTCCAAGTTGAAAATAA
ATAATTTAATTTTTAGGATTTTATTAATTATATTTCAAATCTTCAGGATGGTTGATTTGATAAATATAATCATCTAGTTCTTATCATTTAGACTTTAGGACACTATCCGTTTGTTTAATT
TTAAGGTTAAAATGTGTTATTACTTGAATTTTGTTGCACTTTTTTCTTTGAAAAAATATATCAACAAATTGGTGTGAATTATGCATTGTTCTTGTCCTTGTAATCACCAAGAGTTCAAAT
TGTTTCAGGTGCTCACACAATTGGTATCGCTCATTGCTCATCATTGTCAAACCGCTTGTTCAATTTCACTGGCAAGGGTGATCAAGACCCGTCATTAGACAGTGAATATGCTGCAAATCT
GAAAGCCTTCAAGTGCACGGACCTCAATAAGTTGAACACCACAAAAATTGAGATGGACCCTGGAAGTCGCAAGACATTTGATCTTAGCTACTATAGTCATGTGATTAAGAGAAGGGGTCT
ATTTGAGTCAGATGCTGCATTGTTGACAAACTCAGTTACAAAGGCTCAAATCATTGAATTGCTTGAAGGGTCAGTTGAAAATTTCTTTGCTGAGTTTGCAACCTCCATGGAGAAAATGGG
AAGAATTAATGTAAAGACAGGGACAGAAGGAGAGATCAGGAAGCATTGTGCATTTGTAAATAGCTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

GAAGCATCTG AGTGTTTACT ATTTTGTACT ATATTTATAT ATAGTCACTC AAGCTTCTAG GATTTCTGCC TGCTGCATCA AAATGGGAAG CAACTTGAGG TTTTTGAGTC TTTGCCTCTT GGCATTGATT GCATCGACTC ATGCTCAACT TCAGCTTGGT TTTTATGCTA ACAGTTGCCC AAAAGCAGAG CAAATTGTTT TGAAATTTGT TCATGACCAT ATCCACAATG CTCCATCACT AGCAGCTGCA TTAATAAGAA TGCACTTTCA TGACTGTTTT GTAAGGGGAT GTGATGCATC AGTCCTTCTG AACTCAACAA CCAATCAGGC TGAGAAGAAT GCTCCTCCAA ATCTCACAGT AAGAGGCTTT GACTTCATTG ACAGAATAAA GAGCCTTGTT GAAGCTGAAT GCCCTGGTGT GGTCTCTTGT GCTGATATCC TCACTTTGGC TGCCAGAGAC ACTATTGTAG CCACAGGTGG ACCTTTTTGG AAAGTTCCAA CTGGTCGAAG GGATGGGGTC GTCTCTAACT TGACGGAAGC CAGAAATAAC ATTCCTGCTC CATCTTCCAA CTTTACCACC CTACAAACAC TCTTTGCTAA CCAAGGACTT GATTTGAAGG ACTTGGTCCT GCTCTCTGGT GCTCACACAA TTGGTATCGC TCATTGCTCA TCATTATCAA ACCGGTTGTT CAATTTCACT GGCAAGGGTG ATCAAGACCC GTCACTAGAT AGTGAATATG CTGCAAATTT GAAAGCATTC AAGTGCACAG ACCTCAACAA GTTGAACACC ACAAAAATTG AGATGGACCC TGGAAGTCGC AAGACATTTG ATCTTAGCTA CTATAGTCAC GTTATTAAGA GAAGGGGTCT ATTTGAGTCA GATGCTGCAT TATTGACTAA CTCAGTTACA AAGGCACAAA TCATCCAATT GCTTGAAGGG TCAGTTGAAA ATTTCTTTGC TGAGTTTGCA ACCTCCATCG AGAAAATGGG AAGAATTAAT GTGAAGACAG GCACAGAAGG AGAGATCAGG AAGCATTGTG CATTTATAAA TAGCTAAGAA TCTTGTCTTG TTCATGGATG AATCTTGTAT CATTTATTTT TTGGGGTTTG ATTATTTATG CTATGCCATG TTTTTTGATT AGTTATGCTA TGCCATGTGG TCTCTGTCTA CATACGTGTG ATCCTTTATG GTATGGTTGT TGTATGTGTG TTGGAATAAG TGGGCTCTTA AGTTATTCAT ATTTCCAACT TTCCAACTTT GCTGGTAGAT CATGCTCTTG TAATAAGAAC CAGAATTTTT TGTGCTACCC ACAGCTGAGT
TAATTTA

Retrieve as FASTA