1. Browse the Database
  2. View Redoxidase
Entry information : CiPrx02
Entry ID 2899
Creation 2010-04-30 (Christophe Dunand)
Last sequence changes 2010-04-30 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2010-04-30 (Christophe Dunand)
Peroxidase information: CiPrx02
Name CiPrx02
Class Class III peroxidase     [Orthogroup: Prx010]*
Taxonomy Eukaryota Viridiplantae Streptophyta Asteraceae Cichorium
Organism Cichorium intybus (chicory)    [TaxId: 13427 ]
Cellular localisation N/D
Tissue type Somatic embryos
Inducer Embryogenesis
Repressor N/D
Best BLASTp hits
Perox score E-value CiPrx02
start..stop		 S start..stop
LsePrx23 569 0 1..321 1..321
HaPrx11 565 0 1..321 1..321
HaPrx10 550 0 1..321 1..321
LsaPrx23 517 0 1..296 1..296
Literature and cross-references CiPrx02
Literature Legrand,S., Hendriks,T., Hilbert,J.L. and Quillet,M.C. Identification of differentially expressed genes during somatic embryogenesis in Cichorium intybus Unpublished (2005)
mRNA ref. GenBank:   EH684764.1 [5' end]
EST ref. GenBank:   DT212150.1 [3' end]
Protein sequence: CiPrx02
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   321 (293)
PWM (Da):   %s   34257.78 (31252.2) Transmb domain:   %s   i3-25o
PI (pH):   %s   8.65 (8.58) Peptide Signal:   %s   cut: 29 range:29-321
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MALSTFSSLL KLSTFTLCLW VLFGTTSGQL STNFYARTCP NFRSIITRAV NSAVRNEARM GASLLRLHFH DCFVNGCDAS VLLDDTANFT GEKTAGPNSN SIRGFEVIDT IKTQLERQCP  GVVSCADILS AAARDAVVTL RGPGWNAVFG RRDSTTASQS AANSNLPSPA SSLSGLISSF SNKGFTANEM IALSGAHTIG QARCTTFRSR LYNENNINSS FATSLRVNCP SSGGDNNLSP 
LDSSATSFDN RYYNDLIGQR GLLHSDQELF NGGSADAQVR TYGSNPTTFF RDFASAMVKM GNLSPLTGSS GQVRTNCRRT N 

Retrieve as FASTA  
Remarks Complete sequence from 11 EST (DT212150, DT211151, DT210892, DT213873, DT210813,DT211666,DT212949,DT211543,DT213323,DT211227).
cDNA►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TTCTTTCTCT CTAAATCTTC TACTTGTTGA AATTGTCATA TTCATGGCTT TGTCAACCTT TTCTTCTTTG CTTAAGCTTT CAACTTTCAC TTTATGTTTA TGGGTTCTGT TTGGAACAAC  CTCCGGTCAG CTATCAACCA ATTTCTATGC TAGAACGTGC CCTAATTTCC GTTCTATTAT AACAAGAGCC GTGAATTCAG CTGTTAGAAA TGAAGCTCGC ATGGGAGCTT CGTTGCTTCG  CCTTCATTTC CATGATTGCT TTGTTAATGG ATGTGATGCT TCTGTGTTAT TGGACGACAC TGCAAACTTT ACCGGGGAAA AGACGGCCGG TCCAAATAGT AACTCCATAA GAGGATTCGA  GGTCATTGAT ACTATTAAAA CCCAATTGGA GCGCCAGTGC CCTGGTGTCG TTTCTTGTGC AGACATACTA TCTGCCGCTG CTCGAGATGC CGTTGTGGCT CTTCGCGGCC CAGGTTGGAA  CGCTGTATTT GGAAGGAGGG ATTCGACAAC AGCAAGCCAA AGTGCCGCAA ACTCTAACCT CCCTTCACCA GCTTCAAGTC TTAGTGGCCT CATCTCATCC TTTTCAAACA AAGGTTTTAC  CGCAAACGAA ATGATAGCTC TCTCGGGTGC TCATACAATT GGTCAAGCAA GGTGCACTAC ATTCCGTAGT CGTCTTTACA ATGAGAATAA CATAAATTCA TCCTTTGCGA CCTCATTGAG  AGTAAATTGT CCTTCGAGTG GTGGTGACAA TAATCTCTCT CCACTAGATT CTTCGGCTAC ATCATTCGAT AATAGATACT ATAATGATTT GATTGGCCAG AGGGGATTAC TGCATTCCGA  CCAAGAACTA TTTAACGGGG GTTCAGCAGA TGCACAGGTG AGGACTTATG GGTCGAATCC AACTACTTTC TTTCGTGACT TTGCAAGTGC AATGGTGAAG ATGGGCAATC TTAGCCCTCT  AACTGGCTCC AGTGGCCAAG TTAGGACCAA CTGCCGAAGA ACCAATTAAC CTCTTTTCTT AGACAGCAGG AGAACGTCCA TCAACGTGTT TAAGATACTG AGATATGATA AATTCATTAA 
AAAATAATAC TTATGTTTTT CTGTTTAATG TCGTCTCATT TGATGTTTCT TCCTGATTCC TTATAAATGT AAGGTTGTAA TTCAGnAAGA TTGT 

Retrieve as FASTA