Entry information : CiPrx03
Entry ID 2900
Creation 2006-03-22 (Christophe Dunand)
Last sequence changes 2016-01-14 (Achraf Jemmat)
Sequence status partial
Reviewer Christophe Dunand
Last annotation changes 2016-01-14 (Christophe Dunand)
Peroxidase information: CiPrx03
Name CiPrx03
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Asteraceae Cichorium
Organism Cichorium intybus (chicory)    [TaxId: 13427 ]
Cellular localisation N/D
Tissue type Somatic embryos
Inducer Embryogenesis
Repressor N/D
Best BLASTp hits
Perox score E-value CiPrx03
start..stop
S start..stop
LsePrx13 137 5e-42 2..75 8..81
LsPrx12-3 134 3e-41 2..75 8..81
LsPrx13-1 133 7e-41 1..76 7..82
LsPrx13-2 133 8e-41 1..76 7..82
Literature and cross-references CiPrx03
Literature Legrand,S. et al., Characterization of expressed sequence tags obtained by SSH during somatic embryogenesis in Cichorium intybus L. BMC Plant Biol. 7, 27 (2007)
EST ref. GenBank:   DT213366.1 [Fragment]
Protein sequence: CiPrx03
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   79 (59)
PWM (Da):   %s   8382.38 (6282.1) Transmb domain:   %s   o5-27i
PI (pH):   %s   8.52 (8.06) Peptide Signal:   %s   cut: 21 range:21-79
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

TKTPLFFVVL LATLTTLALG QTRVGFYNTS CPRVETIVQA AVQAAERSTP GVPAGLIRMF FHDCFVNGCD ASILINRGL 

Retrieve as FASTA  
Remarks Partial sequence from 2 ESTs (DT213375.1, DT213366.1). Small part of the 5' end.
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ACCAAAACAC CCCTCTTCTT TGTTGTCCTG TTAGCAACCT TAACCACCTT AGCACTAGGC CAAACCCGAG TTGGCTTCTA CAATACCTCA TGCCCAAGAG TAGAAACCAT TGTGCAGGCT 
GCTGTCCAGG CCGCTGAGCG GTCCACCCCA GGAGTCCCGG CTGGCTTAAT TAGAATGTTT TTTCACGATT GCTTTGTTAA TGGCTGTGAT GCCTCTATCC TAATTAATAG GGGGCTG 

Retrieve as FASTA