Entry information : CsaPrx08 (Cucsa.339390.1)
Entry ID 2918
Creation 2006-03-23 (Christophe Dunand)
Last sequence changes 2012-01-04 (Qiang Li)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-01-04 (Qiang LI)
Peroxidase information: CsaPrx08 (Cucsa.339390.1)
Name (synonym) CsaPrx08 (Cucsa.339390.1)
Class Class III peroxidase    [Orthogroup: Prx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Cucurbitaceae Cucumis
Organism Cucumis sativus    [TaxId: 3659 ]
Cellular localisation N/D
Tissue type Flower buds
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CsaPrx08
start..stop
S start..stop
PpePrx18 504 0 25..326 25..326
MePrx33 498 1e-179 6..326 7..319
CclPrx36 493 2e-177 6..326 8..327
GhPrx27 489 5e-176 2..326 13..326
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2009080..2010060 981  
complement(join(2009080..2010060))


exon

Literature and cross-references CsaPrx08 (Cucsa.339390.1)
Literature Plant Genome Network.
DNA ref. Phytozome 12:   scaffold03356 (2010060..2009080)
EST ref. PGN:   csa02-3ms2-d07
Protein sequence: CsaPrx08 (Cucsa.339390.1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   326 (304)
PWM (Da):   %s   35754.07 (33399.8)  
PI (pH):   %s   8.45 (8.53) Peptide Signal:   %s   cut: 23 range:23-326
Sequence
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Send to Peroxiscan
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MGILKLLFLL LSTASFCSLS ESLPLTPNYY QKSCPRFSQI IQDTVTNKQI TSPSTAAGTL RLFLHDCLPN GCDGSVLISS TPFNKAERDA DINLSLPGDA FDVIVRAKTA LELACPNTVS  CADILALATR DLVTMVGGPY YNVLLGRRDG RVSKASTIPG SLPKATSPIP QIIDIFKARG FTVQEMVALS GAHTIGFSHC KEFGPQIYNY SKSSSYDTQY NPRFAQGLQK ACSGYDKNPT 
LSVFNDIMTP NKFDNSYFQN LPKGLGILKS DHGLYNDWRT RPFVEAYAAD EKKFFNDFAR AMEKLSNYKV VTGNQGEIRH KCDAIN 

Retrieve as FASTA  
Remarks Complete sequence from genomic. Incorrect prediction from phytozome (5' end is missing).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGGATTC TGAAGCTTCT CTTCCTTCTT CTTTCAACGG CGTCGTTTTG TTCTCTATCG GAATCCCTTC CTCTCACCCC GAATTACTAC CAGAAATCCT GCCCGAGATT CAGTCAGATT  ATCCAAGATA CAGTCACCAA CAAACAGATC ACTAGTCCTT CCACCGCTGC TGGTACTCTT CGTCTTTTCC TCCACGACTG CCTTCCCAAC GGCTGTGACG GCTCCGTCCT TATCTCCTCC  ACTCCTTTCA ACAAAGCCGA GCGCGATGCC GACATCAACC TCTCTCTCCC AGGCGACGCC TTCGATGTTA TCGTTCGAGC CAAGACTGCT CTCGAGCTCG CATGTCCCAA CACTGTCTCT  TGTGCTGACA TTCTCGCCCT TGCCACTCGT GACCTCGTCA CCATGGTTGG CGGACCTTAC TACAATGTTC TTCTTGGTCG TAGAGATGGA CGTGTGTCTA AAGCATCGAC GATTCCTGGC  TCTTTACCGA AAGCTACCTC GCCGATTCCT CAGATTATTG ATATTTTTAA AGCTCGGGGG TTTACTGTGC AGGAAATGGT AGCCTTAAGT GGTGCTCATA CGATTGGATT CTCGCATTGT  AAGGAATTCG GTCCTCAGAT CTATAATTAT AGCAAGTCGT CTTCTTATGA TACGCAGTAT AACCCTAGAT TCGCGCAAGG GTTGCAAAAG GCTTGTTCTG GTTATGACAA GAATCCTACA  TTATCGGTTT TCAATGACAT TATGACTCCC AACAAATTTG ATAACTCTTA CTTCCAGAAT CTGCCGAAGG GATTGGGGAT CTTGAAGTCT GATCATGGGT TGTATAATGA TTGGAGGACG  AGACCATTCG TCGAGGCGTA TGCGGCTGAT GAGAAAAAGT TCTTCAATGA TTTTGCTCGA GCGATGGAGA AGTTGAGTAA TTATAAAGTT GTGACAGGGA ATCAAGGGGA GATTAGGCAT 
AAGTGTGATG CGATTAATTG A 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGGATTC TGAAGCTTCT CTTCCTTCTT CTTTCAACGG CGTCGTTTTG TTCTCTATCG GAATCCCTTC CTCTCACCCC GAATTACTAC CAGAAATCCT GCCCGAGATT CAGTCAGATT  ATCCAAGATA CAGTCACCAA CAAACAGATC ACTAGTCCTT CCACCGCTGC TGGTACTCTT CGTCTTTTCC TCCACGACTG CCTTCCCAAC GGCTGTGACG GCTCCGTCCT TATCTCCTCC  ACTCCTTTCA ACAAAGCCGA GCGCGATGCC GACATCAACC TCTCTCTCCC AGGCGACGCC TTCGATGTTA TCGTTCGAGC CAAGACTGCT CTCGAGCTCG CATGTCCCAA CACTGTCTCT  TGTGCTGACA TTCTCGCCCT TGCCACTCGT GACCTCGTCA CCATGGTTGG CGGACCTTAC TACAATGTTC TTCTTGGTCG TAGAGATGGA CGTGTGTCTA AAGCATCGAC GATTCCTGGC  TCTTTACCGA AAGCTACCTC GCCGATTCCT CAGATTATTG ATATTTTTAA AGCTCGGGGG TTTACTGTGC AGGAAATGGT AGCCTTAAGT GGTGCTCATA CGATTGGATT CTCGCATTGT  AAGGAATTCG GTCCTCAGAT CTATAATTAT AGCAAGTCGT CTTCTTATGA TACGCAGTAT AACCCTAGAT TCGCGCAAGG GTTGCAAAAG GCTTGTTCTG GTTATGACAA GAATCCTACA  TTATCGGTTT TCAATGACAT TATGACTCCC AACAAATTTG ATAACTCTTA CTTCCAGAAT CTGCCGAAGG GATTGGGGAT CTTGAAGTCT GATCATGGGT TGTATAATGA TTGGAGGACG  AGACCATTCG TCGAGGCGTA TGCGGCTGAT GAGAAAAAGT TCTTCAATGA TTTTGCTCGA GCGATGGAGA AGTTGAGTAA TTATAAAGTT GTGACAGGGA ATCAAGGGGA GATTAGGCAT 
AAGTGTGATG CGATTAATTG A 

Retrieve as FASTA