RedOxiBase: View Perox 3002

Entry information : BoPrx39_other

Entry ID	3002
Creation	2006-05-04 (Christophe Dunand)
Last sequence changes	2006-05-04 (Christophe Dunand)
Sequence status	partial
Reviewer	Filippo Passardi
Last annotation changes	2006-05-04 (Filippo Passardi)

Peroxidase information: BoPrx39_other

Name

BoPrx39_other

Class

Class III peroxidase [Orthogroup: Prx003]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica

Organism

Brassica oleracea (Cauliflower) [TaxId: 3712 ]

Cellular localisation

N/D

Tissue type

Etiolated seedlings

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	BoPrx39_other start..stop	S start..stop
BrPrx39-1A_other	417	9e-150	1..204	1..204
TsPrx39	392	2e-139	1..204	1..204
AtPrx39	380	5e-135	1..204	1..204
BstrPrx83	379	1e-134	1..204	1..204

Literature and cross-references BoPrx39_other

Literature	Barker,G.C., Sharp,A., Durkin,J., Naylor,R., Edwards,R., Gjetvaj,B. , Lydiate,D. and King,G. Analyis of EST libraries of Brassica oleracea prepared from differing stages of development, Unpublished (2005)
DNA sequence	http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=18778596&dopt=GenBank
DNA ref.	GenBank: 75972281

Protein sequence: BoPrx39_other

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	211 (188)
PWM (Da):	22583.8 (20120.4)	Transmb domain:	o4-21i
PI (pH):	8.14 (8.14)	Peptide Signal:	cut: 24 range:24-211

Sequence 0
Send to BLAST
Send to Peroxiscan

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MARFGLVFVT ILVILGLVSF SEAQLKLGFY DKTCPNAEKI VQAVVNQHIR NVPSLAAGLI RMHFHDCFVR GCDGSILINA TSSNQQVEKV APPNLTVRGF DFIDLVKTVL ERKCPGVVSC
ADIITLATRD SVAAIGGPTW NVPTGRRDGR ISNATEALNN IPPPFGNFTT LITLFGNQGL DVKDLVLLSG AHTIGVSHCS SFSNVSSLYR R

Retrieve as FASTA

Remarks

Partial sequence from 1 EST and 2 GSS (BH508958, BH701182), 3 introns. 3' end is missing. var. alboglabra