View Redoxidase 3002

Entry information : BoPrx39_other

Entry ID	3002
Creation	2006-05-04 (Christophe Dunand)
Last sequence changes	2006-05-04 (Christophe Dunand)
Sequence status	partial
Reviewer	Filippo Passardi
Last annotation changes	2006-05-04 (Filippo Passardi)

Peroxidase information: BoPrx39_other

Name

BoPrx39_other

Class

Class III peroxidase [Orthogroup: Prx003]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica

Organism

Brassica oleracea (Cauliflower) [TaxId: 3712 ]

Cellular localisation

N/D

Tissue type

Etiolated seedlings

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	BoPrx39_other start..stop	S start..stop
BrPrx39-1A_other	417	9.45e-150	1..204	1..204
TsPrx39	392	1.61e-139	1..204	1..204
AtPrx39	380	4.75e-135	1..204	1..204
BstrPrx83	379	1.32e-134	1..204	1..204

Literature and cross-references BoPrx39_other

Literature	Barker,G.C., Sharp,A., Durkin,J., Naylor,R., Edwards,R., Gjetvaj,B. , Lydiate,D. and King,G. Analyis of EST libraries of Brassica oleracea prepared from differing stages of development, Unpublished (2005)
DNA sequence	http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=18778596&dopt=GenBank
DNA ref.	GenBank: 75972281

Protein sequence: BoPrx39_other

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	211 (188)
PWM (Da):	22583.8 (20120.4)	Transmb domain:	o4-21i
PI (pH):	8.14 (8.14)	Peptide Signal:	cut: 24 range:24-211

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MARFGLVFVT ILVILGLVSF SEAQLKLGFY DKTCPNAEKI VQAVVNQHIR NVPSLAAGLI RMHFHDCFVR GCDGSILINA TSSNQQVEKV APPNLTVRGF DFIDLVKTVL ERKCPGVVSC
ADIITLATRD SVAAIGGPTW NVPTGRRDGR ISNATEALNN IPPPFGNFTT LITLFGNQGL DVKDLVLLSG AHTIGVSHCS SFSNVSSLYR R

Retrieve as FASTA

Remarks

Partial sequence from 1 EST and 2 GSS (BH508958, BH701182), 3 introns. 3' end is missing. var. alboglabra