1. Browse the Database
  2. View Redoxidase
Entry information : BoPrx34_other
Entry ID 3007
Creation 2006-06-01 (Christophe Dunand)
Last sequence changes 2006-06-01 (Christophe Dunand)
Sequence status partial
Reviewer Filippo Passardi
Last annotation changes 2009-05-22 (Christophe Dunand)
Peroxidase information: BoPrx34_other
Name BoPrx34_other
Class Class III peroxidase     [Orthogroup: Prx018]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica oleracea (Cauliflower)    [TaxId: 3712 ]
Cellular localisation N/D
Tissue type Roots
Inducer Pathogen interaction
Repressor N/D
Best BLASTp hits
Perox score E-value BoPrx34_other
start..stop		 S start..stop
BrPrx34-1Ab_other 635 0 1..334 1..349
AtPrx34 601 0 8..334 12..353
BstrPrx03 595 0 2..334 6..353
AtPrx33 592 0 8..334 13..354
Literature and cross-references BoPrx34_other
Literature Barker,G.C., Sharp,A., Durkin,J., Naylor,R., Edwards,R., Gjetvaj,B.
, Lydiate,D. and King,G. Analyis of EST libraries of Brassica oleracea prepared from differing stages of development, Unpublished (2005)
DNA ref. GenBank:   BZ020961
EST ref. GenBank:   AM062384.1
Protein sequence: BoPrx34_other
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   334 (308)
PWM (Da):   %s   35718.1 (32888.6)  
PI (pH):   %s   7.94 (7.99) Peptide Signal:   %s   cut: 27 range:27-334
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MHSTLSTWTI LITLACLMLR ASLSDAQLTP TFYDSSCPNV TNIVRETIVN ELRSDPRIAA SILRLHFHDC FVNGCDASIL LDNTTSFRTE KDAAGNANSA RGFPVIDRTK AAVERACPRT  VSCADMLTIA AQQSVTLAGG PSWRVPLGRR DSLQAFLNLA NANLPAPFFT LPQLKASFRN VGLDRPSDLV ALSGGHTFGK NQCRLIMDRL YNFSNTGLPD STLNTAYLQT LRGLCPRTGN 
LSALLDFDLR TSGATTLxxx xFSSPNATDT IPLVRAYADG TQTFFNAFVE AMNRMGNITP LTGTQGQIRL NCRVVNSNSL LHDVVDIVDF VSSM 

Retrieve as FASTA  
Remarks Partial sequence from 2 ESTs (AM062384 and DN478530: fungus infecting B. oleracea) and 1 GSS (first exon). 3' end is missing. Using the high degre of homology with AtPrx34, a part of the 3' end has been added without overlapping (AM057012). var. alboglabra