Entry information : BoPrx49-1Cb_other
Entry ID 3024
Creation 2010-05-17 (Christophe Dunand)
Last sequence changes 2010-05-17 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-05-10 (Christophe Dunand)
Peroxidase information: BoPrx49-1Cb_other
Name BoPrx49-1Cb_other
Class Class III peroxidase    [Orthogroup: Prx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica oleracea (Cauliflower)    [TaxId: 3712 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BoPrx49-1Cb_other
start..stop
S start..stop
BrPrx49-2Aa_other 654 0 1..330 1..331
BrPrx49-1Aa_other 629 0 2..330 6..338
BoPrx49-1Ca_other 610 0 1..330 1..331
AalpPrx09 609 0 1..330 1..331
Literature and cross-references BoPrx49-1Cb_other
Literature Delehaunty,K., Fewell,G., Fulton,L., McCombie,W.R., Miner,T., Nash ,W., Rabinowicz,P.D. and Wilson,R.K. Whole genome shotgun reads from Brassica oleracea Unpublished (2002)
DNA ref. GenBank:   FI733869.1 [5' end]   FI709745.1 [3' end]   BH938536 [Fragment]
EST ref. GenBank:   AM387015.1 [3' end]   AM390819 [Fragment]
Protein sequence: BoPrx49-1Cb_other
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   330 (303)
PWM (Da):   %s   35902.84 (33016.4)  
PI (pH):   %s   8.55 (8.74) Peptide Signal:   %s   cut: 28 range:28-330
Sequence
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Send to Peroxiscan
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MAGLSSSLFV LSLLCVLPLY LCQQSYGGKL NPGYYAHSCP QAGEIVRSVV AQAVARETRM ASLMRLHFHD CFVQGCDGSL LLDSSGRIVS EKSSNPNSKS ARGFEVVDQI KAQLEKQCPG  TVSCADILTL AARDSSVLTG GPSWMVPLGR RDSRSASLSG SNNNIPAPNN TFQTILSKFN RQGLDVTDLV ALSGSHTIGF SRCTSFRQRL YNQSGNGRPD MTLEQSFAAN LRQRCPRSGG 
DQILSVLDKV SPAKFDNSYF KNLMENMGLL NSDQVLFSSN DKSRDLVKKY AEDQGEFFEQ FAESMIKMGN ISPLTGSSGE IRKDCRKINS 

Retrieve as FASTA  
Remarks Complete sequence from GSS (3 introns) and ESTs.
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
AAGGAGGTAA ATTAGTCAAA TTAAGCGGGC AATGTTGGGT ACCAAACACA AACTTTAGTC TCTTTTAATT TTCTTTTCTC CAATATTTTT TTTTTTACAT TTTGTTTTTT CTAGCAGTTC  CCTTGATTAT TATCTTAATC TCTATCTAGT TAATTACCAA CTCCACTTCT TACTTCTTAT TCAAAGTCTC TTCCTATAAA TACCTTCTTC CTCCCCCTCT TGCTTCATAT CACTTCTCAT  CACAAAGTCT TCTCCTCTCT TCATCTTCTC GTCAAACATA ATGGCAGGAC TCAGTAGCTC TCTCTTTGTT CTTTCTCTCC TTTGCGTTCT CCCTCTTTAC CTCTGCCAAC AGAGCTACGG  AGGCAAACTA AACCCTGGTT ACTACGCACA TTCATGCCCT CAAGCCGGAG AGATAGTGAG ATCAGTTGTA GCTCAAGCTG TTGCTAGAGA AACCCGTATG GCCGCTTCAT TGATGAGACT  TCATTTCCAC GACTGTTTCG TTCAGGTTTG GTTAATTTTC TCCCACGTCT ATCAGTTTTT TTGTTTGTTA CGTACTGAGC AAGGTAACTG TGAAATGCAG GGTTGTGATG GCTCTCTGCT  TCTAGACAGC AGTGGGAGGA TAGTGAGTGA GAAAAGCTCC AACCCTAACA GCAAATCAGC TCGTGGATTT GAAGTAGTTG ACCAGATCAA AGCTCAACTT GAGAAACAAT GCCCTGGAAC  TGTCTCTTGT GCTGATATTC TAACCCTAGC CGCTAGAGAC TCCTCTGTTC TTGTAAGTCT TCTCTACAAT GTTTGTTAAA TTTTTTTGAA AAAAAAGAGC TGATTCGGTT TGGTTTGGTT  TGGTTTGGTT TAGACTGGTG GACCAAGCTG GATGGTCCCA TTGGGAAGAA GAGATTCAAG AAGTGCAAGC TTGAGCGGTT CGAACAACAA CATCCCTGCA CCAAACAACA CGTTCCAGAC  AATCCTCAGC AAGTTTAATC GTCAAGGACT TGATGTCACC GACCTTGTTG CTCTCTCCGG TAAACTTTCT TCATTCTATC ACAGTTACTT TACATGCACG GTATAAATAA TAAACCCTAT  AACCTTAATT TGTTATCAGG GAGTCACACT ATTGGATTCT CGAGATGCAC AAGTTTCAGA CAGAGGCTAT ACAACCAGTC CGGAAACGGT CGTCCAGACA TGACATTGGA ACAATCATTC  GCTGCTAACT TGCGTCAAAG GTGTCCAAGA TCCGGAGGGG ACCAGATTCT CTCGGTGCTG GACAAGGTCA GCCCGGCGAA GTTCGACAAC AGCTACTTCA AGAACTTGAT GGAGAACATG  GGGTTGTTGA ACTCGGACCA GGTTCTGTTC AGCAGCAATG ATAAATCGAG AGATCTTGTA AAGAAGTATG CAGAGGATCA AGGAGAGTTT TTCGAGCAGT TTGCCGAGTC GATGATCAAG  ATGGGAAACA TCTCTCCCTT GACCGGTTCG AGTGGTGAAA TCAGGAAGGA TTGCAGGAAG ATAAACTCTT GAATTCATGA TATGAGTAAA ATGTTTTTGA GGGGAAGAAA ATGTGTGACA  CTTGTTTACT TTGTGTGTTT TTTTTTCATG TCATTTGAAG TTTCTGAGGT GTGTTATTTT GATTTTGTGT TAAGATAAGA AAAAAGATTA TTAGGGAATA TTTTAAAATA TTTTCTAATT  TTCAGTTAAA ATATTAGAGA ATTTTTACCA TTATCAATAG AAACTTGTCT ATGAAATCTT ATCAACATAT ATTATTAGTA AATTTTAATT TTATTATTGT AAACCAACTG GCTTATTGAA 
AGGAGATTTT TTAACAATGT GTTTAA 

Retrieve as FASTA