Entry information : PtPrx13 (POPTR_0012s07800 / PT12G06870 / Potri.012G076500)
Entry ID 3090
Creation 2006-06-12 (Claudia Cosio)
Last sequence changes 2006-06-12 (Claudia Cosio)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-07 (Qiang Li)
Peroxidase information: PtPrx13 (POPTR_0012s07800 / PT12G06870 / Potri.012G076500)
Name (synonym) PtPrx13 (POPTR_0012s07800 / PT12G06870 / Potri.012G076500)
Class Class III peroxidase    [Orthogroup: Prx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrx13
start..stop
S start..stop
VvPrx25 483 9e-174 18..329 16..327
PpePrx35 476 1e-170 1..328 1..325
EgrPrx136 473 2e-169 12..329 12..327
RcPrx66 472 3e-169 20..329 18..327
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 10189558..10190547 990  
complement(join(10189558..10190547))


exon

Literature and cross-references PtPrx13 (POPTR_0012s07800 / PT12G06870 / Potri.012G076500)
DNA ref. Phytozome 12:   Chr12 (10190547..10189558)
Omic ref. ePlant:   Potri.012G076500
Protein sequence: PtPrx13 (POPTR_0012s07800 / PT12G06870 / Potri.012G076500)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   329 (309)
PWM (Da):   %s   36486.43 (34198.1)  
PI (pH):   %s   8.87 (8.87) Peptide Signal:   %s   cut: 21 range:21-329
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAFPLRILLL LFLSIPFSES KSNLSFDYYK RSCPNFEKIV RETITTKQMS NPATAAGTLR LFFHDCMVEG CDASVFIASN SFNTAERDAD VNLSLSGDGY EVVIKAKTTL ELTCPKVVSC  ADILAVATRD LVTMVGGPYY KIRLGRKDGL VSKASRVEGN LPRSNMSMTH VINLFASKGF NVQEMVALTG GHTIGFSHCI EFSDRLFSYS KKQATDPELN SKFAAGLRNI CANHTTDKTM 
SAFNDVFTPG KFDNMYFKNL PRGLGLLAYD HALVKDPRTK PFVELYATNQ TVFFQDFSRA MQKLSIHGIK TAINGEVRNR CDQFNSIQT 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTTCC CACTGCGTAT TCTTCTGCTT CTCTTCCTCT CCATTCCTTT CTCAGAGTCG AAGTCCAATC TCTCCTTTGA TTACTACAAG AGATCATGCC CTAACTTCGA AAAGATTGTT  CGTGAAACTA TCACCACCAA ACAAATGAGC AACCCTGCAA CCGCGGCCGG CACTCTACGT CTCTTCTTCC ATGACTGCAT GGTTGAGGGA TGTGATGCCT CGGTTTTCAT AGCATCAAAC  TCATTCAACA CCGCCGAGCG CGATGCAGAC GTTAACCTCT CCCTGTCAGG GGATGGCTAC GAGGTGGTGA TTAAGGCAAA GACTACACTT GAGCTAACTT GCCCTAAAGT CGTCTCCTGC  GCGGACATCC TTGCAGTGGC CACACGTGAT CTTGTCACCA TGGTTGGAGG ACCTTACTAC AAAATCCGAC TAGGAAGGAA GGATGGTTTG GTCTCTAAGG CCTCCAGGGT AGAGGGAAAT  CTCCCCAGGA GCAACATGAG TATGACCCAT GTGATCAATT TGTTTGCCTC CAAAGGATTC AATGTTCAAG AAATGGTTGC ATTAACAGGT GGTCACACCA TTGGATTCTC TCATTGCATT  GAATTCTCCG ATAGGCTATT TAGTTACAGC AAGAAACAAG CAACTGATCC TGAACTCAAC TCCAAGTTTG CAGCCGGATT GAGAAATATT TGTGCTAATC ACACCACAGA TAAAACCATG  TCGGCCTTCA ATGATGTGTT TACGCCAGGC AAGTTTGATA ATATGTATTT CAAGAACTTG CCTAGGGGGC TGGGGCTTTT GGCATATGAT CATGCCCTTG TTAAGGACCC AAGAACTAAG  CCTTTTGTGG AGCTTTATGC AACAAACCAG ACAGTTTTCT TCCAGGATTT CTCTCGTGCA ATGCAGAAGC TTAGCATTCA TGGGATCAAG ACTGCAATAA ACGGAGAAGT GAGGAATAGG 
TGCGATCAGT TCAATTCAAT CCAGACTTAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTTCC CACTGCGTAT TCTTCTGCTT CTCTTCCTCT CCATTCCTTT CTCAGAGTCG AAGTCCAATC TCTCCTTTGA TTACTACAAG AGATCATGCC CTAACTTCGA AAAGATTGTT  CGTGAAACTA TCACCACCAA ACAAATGAGC AACCCTGCAA CCGCGGCCGG CACTCTACGT CTCTTCTTCC ATGACTGCAT GGTTGAGGGA TGTGATGCCT CGGTTTTCAT AGCATCAAAC  TCATTCAACA CCGCCGAGCG CGATGCAGAC GTTAACCTCT CCCTGTCAGG GGATGGCTAC GAGGTGGTGA TTAAGGCAAA GACTACACTT GAGCTAACTT GCCCTAAAGT CGTCTCCTGC  GCGGACATCC TTGCAGTGGC CACACGTGAT CTTGTCACCA TGGTTGGAGG ACCTTACTAC AAAATCCGAC TAGGAAGGAA GGATGGTTTG GTCTCTAAGG CCTCCAGGGT AGAGGGAAAT  CTCCCCAGGA GCAACATGAG TATGACCCAT GTGATCAATT TGTTTGCCTC CAAAGGATTC AATGTTCAAG AAATGGTTGC ATTAACAGGT GGTCACACCA TTGGATTCTC TCATTGCATT  GAATTCTCCG ATAGGCTATT TAGTTACAGC AAGAAACAAG CAACTGATCC TGAACTCAAC TCCAAGTTTG CAGCCGGATT GAGAAATATT TGTGCTAATC ACACCACAGA TAAAACCATG  TCGGCCTTCA ATGATGTGTT TACGCCAGGC AAGTTTGATA ATATGTATTT CAAGAACTTG CCTAGGGGGC TGGGGCTTTT GGCATATGAT CATGCCCTTG TTAAGGACCC AAGAACTAAG  CCTTTTGTGG AGCTTTATGC AACAAACCAG ACAGTTTTCT TCCAGGATTT CTCTCGTGCA ATGCAGAAGC TTAGCATTCA TGGGATCAAG ACTGCAATAA ACGGAGAAGT GAGGAATAGG 
TGCGATCAGT TCAATTCAAT CCAGACTTAG 

Retrieve as FASTA