Entry information : PtPrx15 (POPTR_0010s04550 / PT08G19470 / Potri.010G036100)
Entry ID 3092
Creation 2007-02-07 (Claudia Cosio)
Last sequence changes 2010-06-17 (Marie Brette (Scipio))
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-07 (Qiang Li)
Peroxidase information: PtPrx15 (POPTR_0010s04550 / PT08G19470 / Potri.010G036100)
Name (synonym) PtPrx15 (POPTR_0010s04550 / PT08G19470 / Potri.010G036100)
Class Class III peroxidase    [Orthogroup: Prx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrx15
start..stop
S start..stop
EgrPrx61 491 1e-176 21..327 20..326
EguPrx61 490 3e-176 21..327 20..326
EcamPrx61 489 4e-176 21..327 20..326
VvPrx26 485 2e-174 1..326 1..323
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 6240402..6241388 987  
join(6240402..6241388)


exon

Literature and cross-references PtPrx15 (POPTR_0010s04550 / PT08G19470 / Potri.010G036100)
Literature The genome of black cottonwood, Populus trichocarpa (Torr. & Gray) Science 313 (5793), 1596-1604 (2006).
DNA ref. Phytozome 12:   Chr10 (6240402..6241388)
Omic ref. ePlant:   Potri.010G036100
Protein sequence: PtPrx15 (POPTR_0010s04550 / PT08G19470 / Potri.010G036100)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   328 (305)
PWM (Da):   %s   36079.01 (33544.7)  
PI (pH):   %s   7.94 (7.73) Peptide Signal:   %s   cut: 24 range:24-328
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASPGHNLLI LLLFFMSFPC SKSRLSVDYY NKTCPQFASI IEQIVSDKQI ASPTTAAGVL RLFFHDCMVE GCDGSLLITS TSFNKAERDA DIDQSIPGDA YDLVTRAKTA LELQCPGIVS  CADILATAAR NLVTMVGGPY YHVRLGRKDG LVSNASLVQG NIAQPTMPLS DIISLFYSKG FSVQEMVALV GAHTIGFSHC KEFSNRLFNF SKTSETDPAY NPKYAEGLRK LCANYTKDPT 
MSAYNDVMTP GKFDNMYYKN LQRGLGLLST DQALSVDRRT KPFVDLYAAN ETAFFEAFAH GMEKVSIYKI KTGKKGEVRH RCDQFNAA 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron). No EST.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCATCTC CTGGCCATAA TCTCCTCATA TTACTTCTTT TCTTCATGTC CTTTCCATGT TCAAAGTCCA GACTCTCCGT CGACTATTAC AACAAAACAT GCCCACAATT CGCTTCTATC  ATTGAACAGA TCGTCTCGGA CAAGCAAATT GCTAGCCCCA CCACTGCTGC TGGCGTTCTT CGCCTCTTCT TCCACGACTG CATGGTGGAA GGCTGTGATG GCTCCTTGCT CATCACCTCC  ACATCCTTCA ACAAAGCTGA ACGTGATGCT GACATCGACC AGTCCATCCC TGGAGATGCC TATGACCTTG TCACTCGTGC GAAGACTGCC CTTGAGCTCC AGTGCCCCGG CATTGTCTCT  TGTGCTGACA TTCTAGCCAC CGCTGCACGC AACCTTGTCA CAATGGTGGG AGGTCCTTAC TACCATGTGC GTCTAGGACG CAAAGATGGC CTGGTATCCA ACGCCTCTCT TGTCCAAGGC  AATATTGCTC AACCAACAAT GCCATTGTCA GATATCATCT CCCTTTTTTA TTCCAAAGGG TTTTCAGTGC AAGAAATGGT GGCTTTGGTC GGCGCTCATA CGATAGGGTT TTCCCATTGC  AAAGAATTTA GTAACAGGCT TTTTAACTTC AGCAAGACTT CAGAGACTGA CCCTGCATAC AACCCCAAAT ATGCAGAAGG GCTAAGGAAA TTGTGCGCAA ATTACACGAA GGACCCAACT  ATGAGTGCTT ATAATGACGT GATGACACCA GGGAAATTTG ACAATATGTA CTATAAAAAT CTGCAGAGGG GGTTAGGGTT GCTGTCAACA GATCAAGCCC TTTCTGTGGA TAGGAGGACC  AAGCCCTTCG TAGACTTGTA TGCTGCAAAT GAGACTGCAT TCTTTGAAGC TTTTGCACAT GGAATGGAGA AAGTTAGCAT TTATAAGATC AAGACAGGGA AGAAGGGAGA GGTGAGGCAT 
AGGTGCGACC AGTTCAACGC TGCCTAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCATCTC CTGGCCATAA TCTCCTCATA TTACTTCTTT TCTTCATGTC CTTTCCATGT TCAAAGTCCA GACTCTCCGT CGACTATTAC AACAAAACAT GCCCACAATT CGCTTCTATC  ATTGAACAGA TCGTCTCGGA CAAGCAAATT GCTAGCCCCA CCACTGCTGC TGGCGTTCTT CGCCTCTTCT TCCACGACTG CATGGTGGAA GGCTGTGATG GCTCCTTGCT CATCACCTCC  ACATCCTTCA ACAAAGCTGA ACGTGATGCT GACATCGACC AGTCCATCCC TGGAGATGCC TATGACCTTG TCACTCGTGC GAAGACTGCC CTTGAGCTCC AGTGCCCCGG CATTGTCTCT  TGTGCTGACA TTCTAGCCAC CGCTGCACGC AACCTTGTCA CAATGGTGGG AGGTCCTTAC TACCATGTGC GTCTAGGACG CAAAGATGGC CTGGTATCCA ACGCCTCTCT TGTCCAAGGC  AATATTGCTC AACCAACAAT GCCATTGTCA GATATCATCT CCCTTTTTTA TTCCAAAGGG TTTTCAGTGC AAGAAATGGT GGCTTTGGTC GGCGCTCATA CGATAGGGTT TTCCCATTGC  AAAGAATTTA GTAACAGGCT TTTTAACTTC AGCAAGACTT CAGAGACTGA CCCTGCATAC AACCCCAAAT ATGCAGAAGG GCTAAGGAAA TTGTGCGCAA ATTACACGAA GGACCCAACT  ATGAGTGCTT ATAATGACGT GATGACACCA GGGAAATTTG ACAATATGTA CTATAAAAAT CTGCAGAGGG GGTTAGGGTT GCTGTCAACA GATCAAGCCC TTTCTGTGGA TAGGAGGACC  AAGCCCTTCG TAGACTTGTA TGCTGCAAAT GAGACTGCAT TCTTTGAAGC TTTTGCACAT GGAATGGAGA AAGTTAGCAT TTATAAGATC AAGACAGGGA AGAAGGGAGA GGTGAGGCAT 
AGGTGCGACC AGTTCAACGC TGCCTAG 

Retrieve as FASTA