Entry information : PtPrx[P]17 (POPTR_0010s15760 / Potri.010G147800)
Entry ID 3093
Creation 2010-01-15 (Christophe Dunand)
Last sequence changes 2012-03-08 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtPrx[P]17 (POPTR_0010s15760 / Potri.010G147800)
Name (synonym) PtPrx[P]17 (POPTR_0010s15760 / Potri.010G147800)
Class Class III peroxidase     [Orthogroup: Prx029]*
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrx[P]17
start..stop
S start..stop
PtPrx17 401 2e-141 1..306 8..337
MePrx62 336 8e-116 1..306 8..335
RcPrx48 326 9e-112 1..306 9..337
GhPrx37 308 5e-105 1..306 11..330
Literature and cross-references PtPrx[P]17 (POPTR_0010s15760 / Potri.010G147800)
Literature DOE joint genome institute.
DNA ref. Phytozome 12:   scaffold_10 (14883767..14884973)
Omic ref. ePlant:   Potri.010G147800
Protein sequence: PtPrx[P]17 (POPTR_0010s15760 / Potri.010G147800)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   304
PWM (Da):   %s   32487.21  
PI (pH):   %s   4.85
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CFMMVGKAPT TLNKTCVDDI GVLLQFDVYK ESCPEADPYI LSWVESAISE EPRTAASMLH LPFHDCFVNG LGASVLLDDT ENFVGEKSWT IELELVKSDL ESVCPETVSC ANILAVVATD  SVLLLQSGGP S*EVQMGRKD SLSASKAAAT GNIRAPNSSV SxLVVANFQN VGIIQNDMVA LSGAHTIGKA RCSTLSSRFL CPGNYGGRDV YVDFVQSLQQ PCS*TVDSNT TVAHLDLVTQ 
SSLGKGFLPS DQFFVIEIAH VRLQNPTWRx PLLFFEEFKN STLKMGGLRP xLKMTGEICR NCRTVD 

Retrieve as FASTA  
Remarks Pseudogene. Sequence from genomic (chromo 10). Frame shifts start of exon 1, and end of exon 3 and 4. Stop codon. join(14883767..14883778,14883799..14883993,14884093..14884257,14884343..14884515,14884593..14884762,14884777..14884973).
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TGTTTTATGA TGCTTATTAA GCTTGTAATT GAGTTGGCAA AGCACCAACC ACTTTGAACA AAACATGTGT GGATGATATT GGTGTGCTAT TGCAGTTTGA CGTGTACAAA GAATCCTGCC  CAGAGGCAGA CCCTTATATC TTATCTTGGG TTGAAAGTGC AATCTCCGAG GAACCAAGAA CGGCAGCTTC CATGCTTCAT CTTCCCTTCC ATGATTGCTT TGTTAATGCA AGTCAAAGTT  TAATTTTATG AACTTTACAT ATTGTTTCTC TTTATGAAAG CTTTTATTGC AATAGCAATG GCCATGATAC AAATTGTGTT TTGCAGGGAT TGGGCGCTTC AGTGTTGCTA GATGATACTG  AGAACTTTGT GGGTGAAAAA AGCTGGACCA TTGAACTTGA ACTCGTTAAA TCTGATCTGG AATCTGTTTG TCCTGAAACG GTTTCTTGTG CTAATATTCT CGCAGTTGTT GCCACTGATT  CTGTTCTTCT TGTGTGTTGC ATTTTTGCCA CTCTTCATGT TAAAAGAATA TCTTACTATC TTTAAATGGT TTGAACTAAC CTGAATTCTA CTTAATCTGC AGTCTGGTGG ACCAAGTTAG  GAAGTCCAGA TGGGTAGGAA GGATAGCTTG AGTGCTAGCA AGGCAGCAGC GACTGGGAAT ATACGTGCTC CAAATTCTAG TGTATCAAnn CTCGTAGTGG CTAATTTTCA GAATGTTGGC  ATCATACAGA ATGATATGGT TGCCCTCTCA GGTAATATGT TTCCTATCCT AATGCATGTC AGGACACTCC TGCCACTTGA AAACCACGGT CTAATTGTGA TTCGGCAGGT GCGCACACAA  TAGGAAAAGC TAGATGCTCA ACTCTTAGCT CTCGATTCCT GTGCCCTGGT AACTACGGTG GCCGTGATGT TTATGTGGAC TTCGTTCAGT CGCTACAGCA ACCATGCTCA TAAACTGTTG  ACAGCAACAC GACTGTTGCA CATCTTGACC TGGTGACCCC AGCTACATTC GACAATCTTC TCTAGGAAAG GGATTCCTTC CGTCTGACCA GTTCTTTGTA ATAGAGATCG CACACGTGAG  ATTGCAGAAT CCTACGTGGA GGAnnCCATT ATTATTCTTT GAGGAGTTCA AGAATTCCAC GCTGAAAATG GGAGGCTTAA GGCCGCnnTT AAAGATGACA GGCGAAATAT GTAGGAACTG 
TAGGACAGTC GAC 

Retrieve as FASTA