Entry information : PtPrx18(Potri.001G351000.1 [3.0] /POPTR_0001s34660 / PT01G19510)
Entry ID 3095
Creation 2006-05-31 (Claudia Cosio)
Last sequence changes 2010-07-12 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2019-07-04 (Christophe Dunand)
Peroxidase information: PtPrx18(Potri.001G351000.1 [3.0] /POPTR_0001s34660 / PT01G19510)
Name PtPrx18(Potri.001G351000.1 [3.0] /POPTR_0001s34660 / PT01G19510)
Class Class III peroxidase    [Orthogroup: Prx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue types Leaves
Stems
Inducers Insect damage (Spodoptera exigua, Meloidogyne, Aphib)
Pathogen interaction
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrx18
start..stop
S start..stop
MePrx33 550 0 6..318 7..319
RcPrx41 538 0 21..318 23..320
CclPrx36 506 0 2..318 4..327
GaPrx06 502 0 21..318 29..326
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 32933290..32934246 957  
join(32933290..32934246)


exon

Literature and cross-references PtPrx18(Potri.001G351000.1 [3.0] /POPTR_0001s34660 / PT01G19510)
Literature Ralph,S., et al., Genomics of hybrid poplar (Populus trichocarpax deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defences. Mol. Ecol. 15 (5), 1275-1297 (2006).
DNA ref. Phytozome 12:   scaffold_1 (32933290..32934246)
Omic ref. ePlant:   Potri.001G351000
Protein sequence: PtPrx18(Potri.001G351000.1 [3.0] /POPTR_0001s34660 / PT01G19510)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   318 (296)
PWM (Da):   %s   35622.87 (33038.5)  
PI (pH):   %s   8.67 (8.52) Peptide Signal:   %s   cut: 23 range:23-318
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MPKERFFLIL ISFSSLIYPS QSRLSYNYYS KSCPNFNKII QETVTSKQIT SPSTAAGTLR LFFHDCLPNG CDASILISST PFNSAERDAD INLSLPGDAF DLVTRAKTAL ELSCPNTVSC  ADILTIATRD LVTMVGGPYY NVLLGRKDYR ISKSSYVEGN LPRPTMPMSK IISLFAVKGF SVQEMVALSG AHTIGFSHCK EFKSYLYNDT HYNQRFVQAL RNACADYPKN PTLSVFNDIM 
TPNNFDNKYF DNLGKGLGLL ESDHGLYNNP MTNPFVEIYA KDEKKFFQDF ARAMEKLSVY GIKTGRRGEI RRRCDAIN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no introns) and 4 ESTs (DT497261, CV249987, CV251323, DT498876).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCAAAGG AGCGATTTTT CCTTATTCTC ATTTCCTTCT CTTCTCTCAT ATACCCCTCC CAGTCCAGAC TCTCCTACAA CTACTACTCC AAATCCTGTC CAAACTTCAA CAAAATCATT  CAAGAAACAG TAACCAGCAA GCAGATCACC AGCCCCAGCA CCGCAGCTGG CACTCTCCGC CTCTTCTTCC ATGACTGCTT ACCCAATGGC TGCGATGCCT CCATCCTCAT CTCCTCCACC  CCTTTCAACT CCGCCGAGCG TGATGCTGAC ATCAACCTTT CCTTACCCGG CGACGCCTTC GACCTTGTCA CTCGCGCCAA GACCGCCCTC GAGCTCTCCT GCCCCAACAC CGTCTCCTGC  GCCGACATCC TCACCATCGC CACCCGTGAT CTCGTAACCA TGGTCGGTGG CCCTTACTAC AATGTCCTCC TCGGGCGCAA AGATTACCGC ATCAGTAAAT CTTCTTATGT TGAAGGAAAT  CTGCCAAGAC CCACCATGCC TATGTCTAAA ATTATCAGCT TGTTTGCTGT TAAAGGTTTC AGTGTCCAAG AAATGGTGGC ACTGAGCGGT GCTCATACAA TTGGTTTCTC TCATTGCAAG  GAGTTCAAGA GTTATTTGTA TAACGACACG CATTATAATC AGAGATTTGT TCAGGCGTTG CGAAATGCTT GTGCGGATTA TCCAAAGAAC CCAACTCTGT CGGTGTTCAA TGATATAATG  ACACCAAATA ACTTTGATAA TAAGTATTTT GATAATTTGG GTAAAGGGTT GGGGCTATTA GAGTCAGATC ATGGGTTATA TAACAACCCA ATGACAAATC CTTTTGTGGA GATTTATGCC 
AAGGATGAGA AGAAATTCTT TCAGGATTTT GCAAGAGCCA TGGAGAAGCT AAGTGTTTAT GGGATCAAGA CTGGGAGGAG AGGCGAGATT AGGCGCAGGT GTGATGCCAT TAATTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCAAAGG AGCGATTTTT CCTTATTCTC ATTTCCTTCT CTTCTCTCAT ATACCCCTCC CAGTCCAGAC TCTCCTACAA CTACTACTCC AAATCCTGTC CAAACTTCAA CAAAATCATT  CAAGAAACAG TAACCAGCAA GCAGATCACC AGCCCCAGCA CCGCAGCTGG CACTCTCCGC CTCTTCTTCC ATGACTGCTT ACCCAATGGC TGCGATGCCT CCATCCTCAT CTCCTCCACC  CCTTTCAACT CCGCCGAGCG TGATGCTGAC ATCAACCTTT CCTTACCCGG CGACGCCTTC GACCTTGTCA CTCGCGCCAA GACCGCCCTC GAGCTCTCCT GCCCCAACAC CGTCTCCTGC  GCCGACATCC TCACCATCGC CACCCGTGAT CTCGTAACCA TGGTCGGTGG CCCTTACTAC AATGTCCTCC TCGGGCGCAA AGATTACCGC ATCAGTAAAT CTTCTTATGT TGAAGGAAAT  CTGCCAAGAC CCACCATGCC TATGTCTAAA ATTATCAGCT TGTTTGCTGT TAAAGGTTTC AGTGTCCAAG AAATGGTGGC ACTGAGCGGT GCTCATACAA TTGGTTTCTC TCATTGCAAG  GAGTTCAAGA GTTATTTGTA TAACGACACG CATTATAATC AGAGATTTGT TCAGGCGTTG CGAAATGCTT GTGCGGATTA TCCAAAGAAC CCAACTCTGT CGGTGTTCAA TGATATAATG  ACACCAAATA ACTTTGATAA TAAGTATTTT GATAATTTGG GTAAAGGGTT GGGGCTATTA GAGTCAGATC ATGGGTTATA TAACAACCCA ATGACAAATC CTTTTGTGGA GATTTATGCC 
AAGGATGAGA AGAAATTCTT TCAGGATTTT GCAAGAGCCA TGGAGAAGCT AAGTGTTTAT GGGATCAAGA CTGGGAGGAG AGGCGAGATT AGGCGCAGGT GTGATGCCAT TAATTAA 

Retrieve as FASTA