Entry information : PtPrx20 (POPTR_0001s22610 / Potri.001G218500)
Entry ID 3098
Creation 2006-05-22 (Claudia Cosio)
Last sequence changes 2010-08-03 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-07 (Qiang Li)
Peroxidase information: PtPrx20 (POPTR_0001s22610 / Potri.001G218500)
Name (synonym) PtPrx20 (POPTR_0001s22610 / Potri.001G218500)
Class Class III peroxidase     [Orthogroup: Prx024]*
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrx20
start..stop
S start..stop
MePrx79 409 5e-144 1..330 1..323
LuPrx26 387 2e-135 24..331 12..316
HaPrx42 385 1e-134 7..333 6..327
HaPrx24 384 6e-134 9..334 6..327
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 21511020..21511262 243 N° 2 21511361..21511540 180 N° 3 21511713..21511872 160 N° 4 21511982..21512439 458
join(21511020..21511262,21511361..21511540,21511713..21511872,21511982..21512439 )


exon

Literature and cross-references PtPrx20 (POPTR_0001s22610 / Potri.001G218500)
Literature DOE joint genome institute.
DNA ref. Phytozome 12:   scaffold_1 (21511020..21512439)
Omic ref. ePlant:   Potri.001G218500
Protein sequence: PtPrx20 (POPTR_0001s22610 / Potri.001G218500)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   346 (319)
PWM (Da):   %s   37563.92 (34788.5)  
PI (pH):   %s   8.14 (8.20) Peptide Signal:   %s   cut: 28 range:28-346
Sequence 387
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MEMPRVAAALALALSLIFVNMASQCSGQLQFGFYNGKCKDRNGFQRNVEDIVKQKVKARFSTDTTIVAALLRMQFHDCFVNGCDASILLDVPNGEKTAPPNLSVRGYDFIEEIKTEIENTCPGVVSCADIIVMATRDAVVESRTGWYPVQTGRRDGRVSSAQNVKLPSPSIPIPQAIAAFNSKRLSTIDMVYLLGGGHSVGVAHCGLFQNRLYDFKNTGHPDPTMNTTLLKTLQTLCPQNSGSTNSANLDQDPLKSSSVDKSYYEQIRLGNGILEVDQQLALDSNTRFSVARIAESNDFSFQFGRAMIKLGAVDVKIGKDGEIRKRCAAVNSPNGNSGGNIFNIFG

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, 3 introns). No EST.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGAAATGCCAAGAGTAGCTGCTGCTTTGGCACTAGCACTTAGCCTCATCTTTGTGAACATGGCTAGCCAATGCAGTGGTCAGTTGCAGTTTGGATTCTATAATGGAAAATGCAAGGACA
GAAATGGCTTTCAGAGAAATGTTGAGGATATTGTCAAGCAGAAAGTAAAGGCAAGATTCAGTACAGACACAACAATAGTGGCTGCTCTTCTTCGCATGCAATTTCATGACTGTTTTGTCA
AT
GTAAGAAGGTTTTGCAATCCCTTTCAACGTTAATTTGTTTTAGTACTCTTTGCTCAATACATGCACAATCTAATGCAATTTTTTGGGGGTGTTGAAAGGGATGTGATGCATCTATATT
ACTGGATGTGCCAAATGGTGAGAAAACTGCACCTCCAAATTTAAGTGTGAGGGGCTATGACTTCATCGAGGAAATAAAGACGGAAATTGAAAATACATGCCCGGGAGTCGTCTCTTGTGC
TGATATTATAGTAATGGCTACCAGAGATGCTGTTGTCGAG
GTGCATAACTTTTTTCTATTCCCTTTCAGAATCAATGCATGCGTCTCATTCTTAACAAAAGAATTGAACTGTAAACAAAC
ATTAACAAAATTTATTCAGGGGTCAAAAGAGTAGGATAACAAAAGAATTGAGTGATAAATGCTTGTGCTCATGCATGCAGAGTGATATGAAGTCAAGGACAGGATGGTACCCTGTACAAA
CAGGAAGAAGAGATGGTCGTGTATCTTCTGCTCAAAATGTGAAACTCCCATCTCCAAGTATCCCAATTCCTCAAGCTATTGCAGCATTTAATAGCAAAAGACTGAGCACTATTGACATGG
TTTATCTTCTTG
GTATGTGATGATGCATTTTTCCATTTCTAATTCTCTTTGAAACTACATGTGATATTACATTTCCAAGCACATTACTAATTTGTCTTTTGATTCTTCTGATGATGTATA
GGAGGTGGTCACAGTGTCGGGGTAGCACATTGTGGTTTATTCCAAAATCGTCTTTATGATTTCAAGAACACTGGCCACCCTGATCCAACCATGAATACAACACTACTGAAAACCCTACAA
ACTCTTTGTCCTCAAAATTCTGGCAGTACCAACTCAGCTAATCTCGACCAGGATCCTCTCAAGTCTTCTTCAGTGGACAAATCTTACTACGAGCAAATACGTTTAGGTAATGGGATTCTC
GAAGTTGATCAGCAGCTAGCTCTGGATTCAAACACCAGATTCTCAGTGGCAAGAATAGCTGAAAGCAACGACTTCAGCTTTCAATTTGGTCGGGCCATGATTAAGTTGGGAGCTGTTGAC
GTCAAGATTGGCAAAGATGGGGAGATCAGGAAAAGATGCGCAGCTGTTAATTCACCTAATGGAAATTCTGGTGGAAATATTTTTAATATATTCGGTTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGAAATGCCAAGAGTAGCTGCTGCTTTGGCACTAGCACTTAGCCTCATCTTTGTGAACATGGCTAGCCAATGCAGTGGTCAGTTGCAGTTTGGATTCTATAATGGAAAATGCAAGGACA
GAAATGGCTTTCAGAGAAATGTTGAGGATATTGTCAAGCAGAAAGTAAAGGCAAGATTCAGTACAGACACAACAATAGTGGCTGCTCTTCTTCGCATGCAATTTCATGACTGTTTTGTCA
AT
GGATGTGATGCATCTATATTACTGGATGTGCCAAATGGTGAGAAAACTGCACCTCCAAATTTAAGTGTGAGGGGCTATGACTTCATCGAGGAAATAAAGACGGAAATTGAAAATACAT
GCCCGGGAGTCGTCTCTTGTGCTGATATTATAGTAATGGCTACCAGAGATGCTGTTGTCGAG
TCAAGGACAGGATGGTACCCTGTACAAACAGGAAGAAGAGATGGTCGTGTATCTTCTG
CTCAAAATGTGAAACTCCCATCTCCAAGTATCCCAATTCCTCAAGCTATTGCAGCATTTAATAGCAAAAGACTGAGCACTATTGACATGGTTTATCTTCTTG
GAGGTGGTCACAGTGTCG
GGGTAGCACATTGTGGTTTATTCCAAAATCGTCTTTATGATTTCAAGAACACTGGCCACCCTGATCCAACCATGAATACAACACTACTGAAAACCCTACAAACTCTTTGTCCTCAAAATT
CTGGCAGTACCAACTCAGCTAATCTCGACCAGGATCCTCTCAAGTCTTCTTCAGTGGACAAATCTTACTACGAGCAAATACGTTTAGGTAATGGGATTCTCGAAGTTGATCAGCAGCTAG
CTCTGGATTCAAACACCAGATTCTCAGTGGCAAGAATAGCTGAAAGCAACGACTTCAGCTTTCAATTTGGTCGGGCCATGATTAAGTTGGGAGCTGTTGACGTCAAGATTGGCAAAGATG
GGGAGATCAGGAAAAGATGCGCAGCTGTTAATTCACCTAATGGAAATTCTGGTGGAAATATTTTTAATATATTCGGTTGA

Retrieve as FASTA