Entry information : PtPrx[P]62 (POPTR_0001s12275 / Potri.001G075100)
Entry ID 3139
Creation 2010-01-15 (Christophe Dunand)
Last sequence changes 2012-03-08 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtPrx[P]62 (POPTR_0001s12275 / Potri.001G075100)
Name (synonym) PtPrx[P]62 (POPTR_0001s12275 / Potri.001G075100)
Class Class III peroxidase     [Orthogroup: Prx031]*
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrx[P]62
start..stop
S start..stop
PtPrx62 403 4e-142 1..252 150..400
MePrx118 338 3e-117 1..250 97..344
LjPrx50 323 3e-111 1..250 102..349
GmPrx64 314 5e-108 1..249 94..340
Literature and cross-references PtPrx[P]62 (POPTR_0001s12275 / Potri.001G075100)
DNA ref. Phytozome 12:   scaffold_1 (9505151..9504283)
Omic ref. ePlant:   Potri.001G075100
Protein sequence: PtPrx[P]62 (POPTR_0001s12275 / Potri.001G075100)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   252
PWM (Da):   %s   27136.38  
PI (pH):   %s   5.17
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GCDGSILLNH DGSERRAEAS KSLRRFEAID AIKAEIEEEC PGTVSCADIR AAASGDATVL LGGPYWDVPH GRKDGKVSID KDVDLVPMGR ExxxxLIEFY QSKGLNVLDL VTLSGAHTIG  WATCSSAQRx RLYNHAGIGR PDESLDYRYA NFLAKKESRW AFEYVDRDAR TPQTFDSVCF KNLQDHTRLL STDQSLYSDP RTSPIVDASA DGPEFFNHQF AVSMTKLGNI LVPTVQDGGE 
IRTRCYSVNS NY 

Retrieve as FASTA  
Remarks Partial sequence from genomic (chromo 1, intron 3). Exon 1 is missing. Several frame shift. complement(join(9504283..9504694,9504807..9505151))
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGTTGTGATG GCTCCATTCT GTTGAATCAT GATGGAAGTG AGAGAAGAGC AGAGGCAAGC AAGTCTCTTA GAAGGTTTGA AGCAATTGAT GCTATCAAAG CTGAGATAGA GGAAGAGTGC  CCAGGAACTG TATCGTGTGC TGACATTCGT GCCGCAGCCT CCGGAGATGC TACCGTTCTT CTTGGCGGTC CATACTGGGA TGTTCCGCAT GGAAGGAAAG ATGGGAAAGT TTCTATTGAT  AAAGATGTTG ATTTAGTGCC AATGGGCCGG AACATCACTC TTATTGAATT CTACCAATCT AAGGGTTTGA ATGTGCTTGA TTTGGTCACT CTTTCAGGAG AATTAATTAG CAGAACATAA  TTATTGGTGT TTAACTAAGA AATCAAGAAC CAAATGTGGA TATGGATTTA CAGTAATTGT ATGTTAATGC TTCGTTTTGT CTTCGGCAGG GGCCCATACA ATTGGCTGGG CTACATGCAG  TTCAGCACAG CGCAGGCTGT ACAACCATGC AGGAATCGGC AGACCAGATG AATCCCTTGA TTATAGATAC GCAAACTTCT TGAAAAGAAA GAGATGGGCC TTTGAGTATG TTGATCGAGA  TGCTAGAACC CCGCAGACTT TTGACAGTGT TTGCTTCAAG AATCTCCAAG ACCACACGAG GCTTTTGTCC ACTGATCAAT CCCTATATTC TGATCCAAGG ACTTCTCCAA TTGTTGATGC  ATCGGCTGAT GGACCAGAGT TCTTCAATCA CCAGTTTGCA GTGTCCATGA CAAAGCTCGG CAATATTTTA GTCCCTACAG TTCAAGACGG AGGCGAAATT CGAACTAGAT GCTATTCTGT 
CAACTCTAAT TAC 

Retrieve as FASTA