View Redoxidase 3143

Entry information : PtPrx53 (POPTR_0014s14000 / PT14G08920 / Potri.014G143200)

Entry ID	3143
Creation	2010-01-15 (Christophe Dunand)
Last sequence changes	2010-01-15 (Christophe Dunand)
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2012-03-08 (Qiang Li)

Peroxidase information: PtPrx53 (POPTR_0014s14000 / PT14G08920 / Potri.014G143200)

Name (synonym)

PtPrx53 (POPTR_0014s14000 / PT14G08920 / Potri.014G143200)

Class

Class III peroxidase [Orthogroup: Prx035]

Taxonomy

Eukaryota Viridiplantae Streptophyta Salicaceae Populus

Organism

Populus trichocarpa (Western balsam poplar) [TaxId: 3694 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	PtPrx53 start..stop	S start..stop
PatrPrx01	630	0	1..316	1..316
CclPrx49	514	0	6..316	8..319
CsPrx18	513	0	6..316	8..319
LePrx72	509	0	10..316	13..320

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '3143' 'join(10249054..10249263,10249481..10249672,10249859..10250407)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	10249054..10249263	208	N° 2	10249481..10249672	190	N° 3	10249859..10250407	547
join(10249054..10249263,10249481..10249672,10249859..10250407)

Literature and cross-references PtPrx53 (POPTR_0014s14000 / PT14G08920 / Potri.014G143200)

DNA ref.	Phytozome 12: scaffold_14 (10249054..10250407)
Omic ref.	ePlant: Potri.014G143200

Protein sequence: PtPrx53 (POPTR_0014s14000 / PT14G08920 / Potri.014G143200)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	316 (293)
PWM (Da):	33335.56 (30946.4)
PI (pH):	8.87 (8.95)	Peptide Signal:	cut: 24 range:24-316

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MGSTKFFVTLCVVPLLASSFCSAQLSATFYASTCPNLQTIVRNAM
TGAVNGQPRLAASILRLFFHDCFVNGCDGSILLDDTATFTGEKNANPNRNSARGFEVIDTIKTRVEAACNATVSCADILALAARDGVVLRGGPSWTVPLGRRDARTASQSAANSQIPSPASSLATLISMFSAKGLSAGDMTALSG
GHTIGFARCTTFRNRIYNDTNIDASFATTRRASCPASGGDATLAPLDGTQTRFDNNYYTNLVARRGLLHSDQELFNGGSQDALVRTYSTNGATFARDFAAAMVKMGNISPLTGRNGEIRR
NCRVVN*

Retrieve as FASTA

Remarks

Complete sequence from genomic (introns 1 and 2).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGGCTCTACTAAATTCTTTGTTACACTCTGTGTTGTACCGCTCCTAGCATCCTCCTTTTGCAGCGCACAGCTTTCTGCCACCTTTTATGCTTCGACATGCCCTAATCTTCAAACCATA
GTGCGTAATGCAATGACGGGGGCTGTCAATGGCCAGCCTCGGCTTGCCGCCTCTATCCTCCGCTTGTTCTTCCATGACTGCTTTGTGAATATGTGTGACATCTCTCTTTTTAATATCTTT
CTTCCCCACCTTAATTGTTTAGCTTTCTTGGTTTGAGATTAATTAATTAATTCCCACCAAGAGTAAAAATGGGATTAAATGTTCAATGAGCTGCTCTCTAGCTAGTCTTCGAGCTTGCTT
ATATATATATATATATATATATATTAACTTTTTAAAATAATTTTCTTTAATTATTTCGTGTTGTTGCAGGGATGCGACGGATCTATACTACTGGATGACACTGCCACTTTCACGGGTGAA
AAGAATGCGAATCCCAACAGGAATTCAGCTAGAGGTTTTGAAGTGATTGACACCATTAAAACTCGGGTAGAAGCGGCTTGCAATGCCACAGTTTCCTGCGCAGATATCCTTGCACTTGCA
GCCCGAGATGGAGTTGTACTGTGGTTAGTTTTTTTTTATCAAATTTTCTGTTTTCTATCTAGCAATACTACTCCTTTTTCTTTTTTCTTTTCTTTTTTTGGGGTTTTGAGCTATCAAAGT
TCAATTCTCAACACCGATTAATTAAAGAAAGTGAACTGTATACACAAATTCGTTCTCGGTTGACTATATACACAAATGCATGCACGCAGCGAGGAGGACCATCATGGACAGTACCACTTG
GCCGGAGAGATGCAAGAACAGCTAGCCAGAGTGCAGCCAACAGCCAAATCCCATCACCCGCGTCTAGCCTTGCGACCCTAATCTCCATGTTTTCTGCCAAAGGCTTGAGTGCTGGTGACA
TGACTGCGCTCTCTGGGGGTCACACAATTGGCTTTGCCAGATGCACCACATTTCGTAACCGCATATACAATGACACCAACATTGATGCCAGCTTTGCCACTACTAGAAGGGCTAGTTGCC
CTGCTTCTGGTGGTGACGCCACTTTGGCTCCACTCGATGGCACTCAAACCAGATTTGATAACAATTATTACACCAATCTTGTGGCCCGCCGTGGCTTGCTTCATTCAGACCAGGAGCTCT
TCAACGGAGGTTCTCAAGATGCACTTGTCAGGACTTACAGCACAAACGGCGCTACCTTTGCTAGAGATTTTGCTGCTGCCATGGTGAAGATGGGGAATATCAGCCCCCTTACAGGGAGGA
ATGGAGAGATAAGAAGGAATTGCAGGGTGGTGAATTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA