Entry information : PtPrx[P]81 (POPTR_0004s00780 / PT00G28605 / Potri.004G006400)
Entry ID 3176
Creation 2006-07-21 (Claudia Cosio)
Last sequence changes 2012-03-08 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtPrx[P]81 (POPTR_0004s00780 / PT00G28605 / Potri.004G006400)
Name (synonym) PtPrx[P]81 (POPTR_0004s00780 / PT00G28605 / Potri.004G006400)
Class Class III peroxidase     [Orthogroup: Prx006]*
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrx[P]81
start..stop
S start..stop
GmPrx324 249 2e-83 4..191 3..200
EglPrx85 249 3e-83 1..191 1..192
EgrPrx85 249 4e-83 1..191 1..192
EcamPrx85 247 2e-82 1..191 1..192
Literature and cross-references PtPrx[P]81 (POPTR_0004s00780 / PT00G28605 / Potri.004G006400)
Literature DOE joint genome institute
DNA ref. Phytozome 12:   scaffold_4 (358450..357191)
Omic ref. ePlant:   Potri.004G006400
Protein sequence: PtPrx[P]81 (POPTR_0004s00780 / PT00G28605 / Potri.004G006400)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   221 (197)
PWM (Da):   %s   23834.21 (21351.8) Transmb domain:   %s   o4-22i
PI (pH):   %s   5.02 (4.83) Peptide Signal:   %s   cut: 25 range:25-221
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MGNVSLIFML VVVVLAIRVG VGQSQLTYDY YRSSCLNVET IVRQEMLGIF LVDVTAPAAF LRLMFHDCQV QICDASILLD SGNSELFSSK NLGIRKQEAI GYIKSVLEAE CPGQVSCADI 
IVLAAKESVD FSGGPRIQIP LGRKDSTTSN NKQSDDLLPS PAVTVDELLH IFMSKGMDLE VSVAIMGxNE LLTQSSTAKY FATNVLTEGK GQARRYCNKV N 

Retrieve as FASTA  
Remarks Partial sequence from genomic (chromo 4). exon 3 is missing (=> no htig). complement(join(357191..357263,357531..357877,357917..357947,358238..358450))
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGAAATG TTTCTCTGAT TTTTATGTTA GTGGTGGTAG TGTTAGCGAT CAGAGTTGGT GTTGGCCAAT CCCAGCTTAC ATATGATTAC TACAGATCTT CGTGTCTAAA TGTGGAAACT  ATAGTTAGGC AAGAAATGCT AGGCATTTTC TTGGTGGATG TTACAGCACC AGCTGCTTTT CTTAGGCTCA TGTTCCATGA CTGCCAAGTT CAGGTTAAAA AAAATTATAT TTCCTTGTTT  GTTCTCTGCT TAGAAAAAAT ATGGTAATGT CATTGTAACA TATGGTTTCT TTCTATGGTG TCCTGCATTT TGAACTCAAG TCATGGCTCG TATAATCCTT GCTACTGTAT CTTCTTTCTT  CTTCTGAACC TATGTATTAT ATGGATTCGC TTATAAGCTG AAAATGATTG GTTGATATTG CTTGTACAAG GCACCAGTAG ACAGTAGTGT TATTAAGTTA GGTTTATTGT TCTTGCATGA  GAATCCTCTC ACTTTCTGTA TGCATATGTG ACGCGTCGAT CTTGCTGGAT TCAGGCAATT CTGAATTGTT TTCTTCAAAA ATGCTGGATT CAGGCAATTC TGAATTGTTT TCTTCAAAAA  ACTTAGGTAT CAGAAAGCAA GAAGCAATAG GGTATATAAA ATCTGTACTG GAAGCTGAGT GTCCAGGACA GGTATCTTGT GCAGATATTA TCGTATTAGC AGCTAAGGAA TCAGTAGACT  TCTCCGGAGG ACCCCGAATT CAGATCCCTT TAGGAAGGAA AGACTCTACC ACTAGTAACA ACAAACAGTC TGATGATCTT CTTCCTTCAC CAGCAGTAAC AGTTGATGAA TTGCTTCATA  TTTTCATGTC TAAAGGGATG GATTTGGAGG TATCAGTGGC CATCATGGGT TnnAATGAGT TATTAACACA ATCCAGTACT GCTGTTTATA TTGAGAAACA ACTTCAGACC TTTATGACAT  TAAAGATTAT CAATGCCAGT TCATAATTAA TGCATCTTGC ATTTCTGAGA TTAAAAATCA CTTAACCCTT AATTAAGCAT GCCAGTACAA GGAACTTATT GCAACCTTAA GGTTGCTACT  GTCATTAATG CAGCTACAGA TAGCATGGAA GTAACTACCA AAAACAGCAG AACACCATAA AAAATAGACG ACAAGAAATA CTGGCCATTT AGGGCATGGT GGCATGAAGA AAGTACTTTG 
CAACTAATGT TCTTACAGAA GGGAAAGGAC AGGCCAGGAG ATACTGCAAC AAAGTGAACT GA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGAAATG TTTCTCTGAT TTTTATGTTA GTGGTGGTAG TGTTAGCGAT CAGAGTTGGT GTTGGCCAAT CCCAGCTTAC ATATGATTAC TACAGATCTT CGTGTCTAAA TGTGGAAACT  ATAGTTAGGC AAGAAATGCT AGGCATTTTC TTGGTGGATG TTACAGCACC AGCTGCTTTT CTTAGGCTCA TGTTCCATGA CTGCCAAGTT CAGATATGTG ACGCGTCGAT CTTGCTGGAT  TCAGGCAATT CTGAATTGTT TTCTTCAAAA AACTTAGGTA TCAGAAAGCA AGAAGCAATA GGGTATATAA AATCTGTACT GGAAGCTGAG TGTCCAGGAC AGGTATCTTG TGCAGATATT  ATCGTATTAG CAGCTAAGGA ATCAGTAGAC TTCTCCGGAG GACCCCGAAT TCAGATCCCT TTAGGAAGGA AAGACTCTAC CACTAGTAAC AACAAACAGT CTGATGATCT TCTTCCTTCA  CCAGCAGTAA CAGTTGATGA ATTGCTTCAT ATTTTCATGT CTAAAGGGAT GGATTTGGAG GTATCAGTGG CCATCATGGG TTnnAATGAG TTATTAACAC AATCCAGTAC TGCAAAGTAC 
TTTGCAACTA ATGTTCTTAC AGAAGGGAAA GGACAGGCCA GGAGATACTG CAACAAAGTG AACTGA 

Retrieve as FASTA