Entry information : PabPrx05(PAB00032139 / MA_207021g0010 / Px5)
Entry ID 3178
Creation 2006-06-26 (Christophe Dunand)
Last sequence changes 2006-06-26 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2021-01-13 (Christophe Dunand)
Peroxidase information: PabPrx05(PAB00032139 / MA_207021g0010 / Px5)
Name PabPrx05(PAB00032139 / MA_207021g0010 / Px5)
Class Class III peroxidase    [Orthogroup: Prx054]
Taxonomy Eukaryota Viridiplantae Streptophyta Pinaceae Picea
Organism Picea abies (Norway spruce)    [TaxId: 3329 ]
Cellular localisation N/D
Tissue type Cell culture
Inducer Lignification
Repressor N/D
Best BLASTp hits
Perox score E-value PabPrx05
start..stop
S start..stop
PtaPrx86 612 0 1..320 1..320
PtaPrx75 607 0 1..320 1..320
PabPrx06 599 0 1..320 1..320
PabPrx07 597 0 1..320 1..320
Literature and cross-references PabPrx05(PAB00032139 / MA_207021g0010 / Px5)
Literature Koutaniemi,S., Toikka,M.M., Karkonen,A., Simola,L.K.,Kilpelainen,I.A. and Teeri,T.H. Characterization of p-coumaryl and coniferyl alcohol specific peoxidases from a lignin-forming Picea abies suspension culture, Unpublished
Protein ref. UniProtKB:   Q4W2V4
mRNA ref. GenBank:   AJ809340
Protein sequence: PabPrx05(PAB00032139 / MA_207021g0010 / Px5)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   320 (294)
PWM (Da):   %s   33922.94 (31175.6) Transmb domain:   %s   i7-29o
PI (pH):   %s   8.7 (8.75) Peptide Signal:   %s   cut: 27 range:27-320
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MMMRTLVCIG VMAVLLCSIN INAVNGQLSS TFYAKSCPRV QSIVKTVVKQ AVAKEKRMGA SLVRLHFHDC FVNGCDGSIL LDDNATFTGE KTAGPNANSA RGFDVIDTIK TQVEAACSGV  VSCADILTIA ARDSIVELQG PTWTVMLGRR DSPTASLSAA NNNIPSPASS LSTLITSFQN HGLSTKDLVA LSGAHTIGQS RCAFFRTRIY NESNINAAFA TSVKPNCPSA GGDNTLSPLD 
VVTPTTFDNK YYSNLKVQKG LLHSDQQLFN GGSTDSQVTT YSTNQNSFFT DFAAAMVKMG NISPLTGTSG QIRKNCRKAN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (incorrect prediction, missing parts due to splicing errors and NN in sequence) and 1 cDNA.
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGGGCGT CCTTGGTCCG CCTTCACTTT CACGATTGCT TTGTCAATGT AAGAAAGAGT TTTATTTAGC TGATAATATT GACTCGTCAC TAATCATTTC TGCTGTGATC GTCTGTCGTG  TTGAATTTTG GATTCGGTTC CCTTGCAGGG GTGCGATGGT TCGATTCTAT TGGATGACAA CGCGACGTTT ACCGGAGAAA AGACTGCAGG CCCAAACGCC AATTCTGCGA GAGGATTTGA  CGTAATAGAC ACTATTAAAA CACAAGTGGA GGCAGCTTGC AGTGGAGTCG Tnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnGTGGAGTC GTGTCGTGTG CAGACATTCT  CACCATTGCT GCTCGTGATT CTATTGTTGA AGTAATCCTC CGTTCATCTT ACATTGAATT AGCTTTTCAT GATAAATACA ATATATACCA TTTCATTTCA GAGGAACTGG CCAAGTTAAA  CAATGCTCTC TAATTATTTG TCATTGCAAT TTGTTAGCTT CAAGGCCCAA CATGGACGGT AATGCTGGGA AGGCGAGACT CCCCGACTGC GAGTTTAAGC GCTGCAAACA ACAACATTCC  GTCTCCCGCT TCCAGTCTCA GTACACTCAT CTCATCTTTT CAAAGTAACG GTCTTTCTAC CAAGGACCTT GTTGCACTCT CAGGTATACT ATTACTCATG GAGCCATCAT GTTACTAAAC  CATATAACTT TCATGTAATT AAATTGAACT CTTATCACGA GCTGCTGTTA TTATTATTAC AGGTGCTCAT ACAATTGGTC AATCGCGGTG CGCCTnnnnn nnnnnnnnAT TAACGCTGCC  TTCGCTACAT CTGTGAAGCC AAACTGCCCA AGCGCTGGAG GGGACAACAC TCTCTCCCCC TTAGATGTGG TCACCCCTAC GACATTTGAC AACCAGTATT ACAGTAATCT GAAAGTACAG  AAAGGACTTC TCCACTCCGA CCAGCAGCTG TTTAATGGAG GTTCTACGGA TTCTCAGGTT ACTGCCTACA GCACCAATCA AAACAGCTTC TTTACAGACT TTGCAGCTGC CATGGTGAAG 
ATGGGTAATA TCAGCCCCCT CACTGGCACT AGCGGGCAAA TCCGCAAAAA CTGTAGGAAG GCCAATTAA 

Retrieve as FASTA