Entry information : SmPrx03-1_122 (SmPrx03a_122)
Entry ID 3179
Creation 2009-08-18 (Christophe Dunand)
Last sequence changes 2009-08-18 (Christophe Dunand)
Sequence status complete
Reviewer Paula Nunes
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmPrx03-1_122 (SmPrx03a_122)
Name (synonym) SmPrx03-1_122 (SmPrx03a_122)
Class Class III peroxidase    [Orthogroup: Prx269]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type Whole plant
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx03-1_122
start..stop
S start..stop
SmPrx03-2_114 643 0 1..317 1..317
SmPrx35-1_84 323 9e-111 20..316 27..328
SmPrx35-2_170 323 1e-110 20..316 27..328
SmPrx10-2_25 316 6e-108 19..316 22..323
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 115908..116105 198 N° 2 115652..115840 189 N° 3 115393..115558 166 N° 4 114938..115338 401
complement(join(114938..115338,115393..115558,115652..115840,115908..116105))


exon

Literature and cross-references SmPrx03-1_122 (SmPrx03a_122)
Literature DOE Joint Genome Institute and Stanford Human Genome Center
DNA ref. Phytozome 12:   scaffold_122 (116105..114938)
mRNA ref. JGI transcript:   186230
EST ref. GenBank:   DN839746 [3' end]
Protein sequence: SmPrx03-1_122 (SmPrx03a_122)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   317 (298)
PWM (Da):   %s   33483.67 (31415.5)  
PI (pH):   %s   5.28 (5.65) Peptide Signal:   %s   cut: 20 range:20-317
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MLEPLFVLVLQLSAVCIQAQLLVGFYDSSCPRAESIVQQSVMMAIQSNRPLASRLVRLFFHDCFVQGCDASILLDSTPNNTAEKDSRASATVGGYEVIDAAKNTLEAVCPGTVSCADVVALAARDAIFFSGGPHWDVPTGRRDGLVSQASVVASNLPDPSFNVDQSTASFSAKGLSQSDLVVLSGAHTIGFAHCGAIMNRFSANGSDPTLDPTFGKMLESSCPSPSPDATKLLPLDVLSNTIFDNAYFVNLQAGKGLMSSDQALFTDPRTKPLVNAFAQNANSFSANFQLAMVRLGQVQVKTGSDGQIRKNCRAINS

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns) and 1 EST. In the same clone than SmPrx01b and 02a.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTGGAGCCTCTTTTCGTCCTGGTTCTCCAACTCTCTGCTGTATGCATTCAAGCGCAGCTGCTCGTTGGATTCTATGACAGCTCCTGCCCGAGAGCCGAGAGCATTGTGCAACAATCC
GTGATGATGGCGATCCAAAGTAATCGCCCGCTCGCATCGCGTCTAGTTCGGCTCTTCTTCCACGACTGCTTCGTGCAA
GTAAGTTTGAAGCTAGAGCTCGAGCTGCATCTGATGTCGCTA
CTCATGCCTGCGTTTTGTGCCACAGGGGTGTGACGCCTCAATCTTGCTCGACTCAACTCCAAACAACACTGCGGAGAAAGATAGCCGGGCGAGCGCAACCGTGGGTGGCTACGAGGTGAT
TGATGCCGCCAAGAACACGCTGGAAGCTGTGTGCCCCGGAACTGTGTCATGCGCAGATGTAGTAGCATTGGCGGCCAGGGATGCCATATTCTTT
GTAAGTTGATAGCCTCTTTGCTCTTT
TGTTTACTGGCCACGGGCAGAGCGCAGTGCATTGATTGACTGCTCTATCTCTGTTCTTTTTTGCTAGTCTGGAGGGCCGCACTGGGACGTTCCAACTGGACGGAGAGACGGTCTTGTTTC
ACAGGCTTCCGTCGTCGCCTCCAACTTACCAGATCCATCCTTTAACGTGGACCAGTCGACAGCATCTTTCAGCGCCAAGGGTCTGTCTCAGTCGGACCTGGTGGTTCTTTCAG
GTGAGCA
AACGCGACTTGGTGGATGTTCTCAGTTGTGTTCACTAATCTGTGTAGGCGCTCATACCATTGGTTTTGCGCACTGTGGAGCGATCATGAATCGCTTTAGTGCCAACGGAAGCGATCCGAC
GCTGGATCCAACGTTTGGAAAGATGTTGGAGTCGAGCTGCCCGTCTCCCAGTCCAGACGCCACCAAGCTGCTGCCCCTGGATGTATTGAGCAACACCATCTTCGACAATGCCTACTTCGT
CAACTTGCAGGCGGGGAAGGGCCTCATGTCGTCGGACCAGGCGCTGTTTACTGATCCAAGGACAAAGCCGCTGGTGAACGCCTTTGCTCAAAACGCAAACAGCTTCTCTGCAAACTTCCA
GCTGGCTATGGTGCGACTGGGACAGGTCCAGGTGAAGACTGGCTCGGATGGCCAGATTCGGAAAAACTGCCGGGCAATCAATTCTTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTGGAGCCTCTTTTCGTCCTGGTTCTCCAACTCTCTGCTGTATGCATTCAAGCGCAGCTGCTCGTTGGATTCTATGACAGCTCCTGCCCGAGAGCCGAGAGCATTGTGCAACAATCC
GTGATGATGGCGATCCAAAGTAATCGCCCGCTCGCATCGCGTCTAGTTCGGCTCTTCTTCCACGACTGCTTCGTGCAA
GGGTGTGACGCCTCAATCTTGCTCGACTCAACTCCAAACAAC
ACTGCGGAGAAAGATAGCCGGGCGAGCGCAACCGTGGGTGGCTACGAGGTGATTGATGCCGCCAAGAACACGCTGGAAGCTGTGTGCCCCGGAACTGTGTCATGCGCAGATGTAGTAGCA
TTGGCGGCCAGGGATGCCATATTCTTT
TCTGGAGGGCCGCACTGGGACGTTCCAACTGGACGGAGAGACGGTCTTGTTTCACAGGCTTCCGTCGTCGCCTCCAACTTACCAGATCCATCC
TTTAACGTGGACCAGTCGACAGCATCTTTCAGCGCCAAGGGTCTGTCTCAGTCGGACCTGGTGGTTCTTTCAG
GCGCTCATACCATTGGTTTTGCGCACTGTGGAGCGATCATGAATCGC
TTTAGTGCCAACGGAAGCGATCCGACGCTGGATCCAACGTTTGGAAAGATGTTGGAGTCGAGCTGCCCGTCTCCCAGTCCAGACGCCACCAAGCTGCTGCCCCTGGATGTATTGAGCAAC
ACCATCTTCGACAATGCCTACTTCGTCAACTTGCAGGCGGGGAAGGGCCTCATGTCGTCGGACCAGGCGCTGTTTACTGATCCAAGGACAAAGCCGCTGGTGAACGCCTTTGCTCAAAAC
GCAAACAGCTTCTCTGCAAACTTCCAGCTGGCTATGGTGCGACTGGGACAGGTCCAGGTGAAGACTGGCTCGGATGGCCAGATTCGGAAAAACTGCCGGGCAATCAATTCTTAG

Retrieve as FASTA