Entry information : GbPrx32
Entry ID 3183
Creation 2006-06-26 (Christophe Dunand)
Last sequence changes 2015-03-18 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-12-06 (Christophe Dunand)
Peroxidase information: GbPrx32
Name GbPrx32
Class Class III peroxidase    [Orthogroup: Prx118]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type Roots
Inducer Pathogen interaction
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx32
start..stop
S start..stop
GbPrx73 659 0 1..329 1..329
GbPrx54 466 9e-167 5..329 13..337
PabPrx105 458 2e-163 9..328 22..341
PabPrx85 457 5e-163 4..329 11..339
Literature and cross-references GbPrx32
Literature Johnk,N., Fossdal,C.G., Collinge,D.B. and Newman,M.-A. Differential display based identification of defense related genes in Norway spruce roots against the root dieback disease causing pathogen Rhizoctonia sp.
Protein ref. UniProtKB:   Q4VSU8 [3' end]
mRNA ref. GenBank:   AY639589.1 [3' end]
Protein sequence: GbPrx32
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   329 (303)
PWM (Da):   %s   35513.27 (32671.6) Transmb domain:   %s   i5-27o
PI (pH):   %s   9.92 (9.86) Peptide Signal:   %s   cut: 27 range:27-329
Sequence
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Send to Peroxiscan
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MARPVVTLSI SAFLFLLITC LPALHAQLTA DFYQKSCPRA LQIVRSAVQQ AVLKEARMGA SLLRLHFHDC FVQGCDASLL LDDTSTIRSE KRSNPNMNSA RGFDVVDTIK SKLESACPGV  VSCADILAIA ARDSVILSGG PFWNVLLGRK DSRTASLSGS NNNIPPPNAT LQTLITKFRN QGLSITDLVA LVGGHTIGQS RCTSFKQRLY NQAGKGQPDS TIAKPYLSQL RAKCPASGGD 
NNLSPLDFVS PTRFDNQYYK NLVVGKGLLN SDQELYSSSG SQTMSVAKGY AANPYAFFKQ FAESMVKMGN ISPLTSSKGE IRKNCRRIN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no prediction from SymDB, scaffold5544) and RNA seq (gba_locus_23769_iso_2_len_1126_ver_2). No ESt found.
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCCAGGC CGGTCGTTAC ATTGTCCATA TCGGCGTTTT TGTTCCTCCT GATTACCTGC TTGCCGGCAT TGCATGCACA ATTGACTGCA GACTTCTACC AAAAGTCGTG TCCGCGAGCG  CTCCAGATTG TGAGGTCAGC AGTGCAGCAG GCGGTGCTTA AAGAAGCTCG TATGGGGGCG TCTTTACTTC GTCTTCATTT TCACGATTGC TTCGTGCAGG TTCACTTTCT GCTTCTCTGC  CTCCTATTAT TTTGCTCTTA ATTTGACGAA TATGAATGCA ATTCACCGTC TGTATCATTT TTATTTTGTC ATATTTTGGT CGTTGATAAA TGTATTCATT GGCAATCATA TTGCAGGGCT  GCGATGCGTC ATTGTTGCTG GATGACACCT CCACAATCCG AAGTGAGAAA AGATCGAATC CAAACATGAA TTCTGCGAGG GGATTCGACG TTGTGGATAC CATTAAAAGC AAACTGGAGA  GTGCCTGCCC CGGTGTTGTA TCTTGTGCCG ACATCCTTGC TATTGCAGCT CGGGACTCTG TGATTCTGGT ATTATTTGTG TATATCCATT CTTATCGATA TATATATATA TATATATATA  TATTCCGTTA GTCTTATGGT GTTTCTAGAT TTTGTGTATT ATTGATTTGT TTATTTCGAA GGATTGGTAT CATGTAATGA TCTATCAAGG AGACATTTAC ATTTAATAAA CGTCTATGTT  ATTTTATGCA TTGGTTTGGT ACAGAGTGGA GGACCATTCT GGAATGTACT TTTGGGACGG AAGGATTCGA GAACTGCAAG TTTGAGCGGC TCAAACAACA ATATTCCGCC ACCTAATGCA  ACACTGCAAA CTCTCATCAC AAAGTTTAGA AACCAAGGGC TCTCAATCAC AGACTTAGTT GCACTCGTCG GTAATTCTAC ATTCTTTATA CACTTTATGG TCAGAAAAGG AATGGAAGAA  ATTCTGTAAT GTGATGTTGG AAGTAAGTTT TGTTGGCTAA AATGTATTTT GAGAAATGAA AATGCAGGAG GGCATACAAT TGGGCAGTCG AGGTGCACGA GCTTCAAGCA GAGGCTGTAC  AATCAGGCGG GAAAGGGACA GCCAGATTCT ACAATAGCAA AGCCATATCT GTCACAGTTG AGAGCCAAAT GTCCTGCTTC GGGTGGAGAT AACAATTTGT CGCCCTTAGA TTTTGTGAGC  CCGACGAGAT TCGACAACCA GTATTACAAG AACTTAGTGG TGGGGAAGGG GCTGCTTAAC TCCGATCAGG AGCTGTATTC CAGCTCCGGA AGCCAAACCA TGTCTGTGGC GAAAGGTTAT  GCGGCTAATC CATACGCATT TTTCAAGCAA TTCGCTGAGT CGATGGTGAA GATGGGGAAT ATCAGTCCTC TCACCTCCTC CAAAGGAGAA ATCAGAAAGA ACTGCCGTAG AATCAATTGA 

Retrieve as FASTA  
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCCAGGC CGGTCGTTAC ATTGTCCATA TCGGCGTTTT TGTTCCTCCT GATTACCTGC TTGCCGGCAT TGCATGCACA ATTGACTGCA GACTTCTACC AAAAGTCGTG TCCGCGAGCG  CTCCAGATTG TGAGGTCAGC AGTGCAGCAG GCGGTGCTTA AAGAAGCTCG TATGGGGGCG TCTTTACTTC GTCTTCATTT TCACGATTGC TTCGTGCAGG GCTGCGATGC GTCATTGTTG  CTGGATGACA CCTCCACAAT CCGAAGTGAG AAAAGATCGA ATCCAAACAT GAATTCTGCG AGGGGATTCG ACGTTGTGGA TACCATTAAA AGCAAACTGG AGAGTGCCTG CCCCGGTGTT  GTATCTTGTG CCGACATCCT TGCTATTGCA GCTCGGGACT CTGTGATTCT GAGTGGAGGA CCATTCTGGA ATGTACTTTT GGGACGGAAG GATTCGAGAA CTGCAAGTTT GAGCGGCTCA  AACAACAATA TTCCGCCACC TAATGCAACA CTGCAAACTC TCATCACAAA GTTTAGAAAC CAAGGGCTCT CAATCACAGA CTTAGTTGCA CTCGTCGGAG GGCATACAAT TGGGCAGTCG  AGGTGCACGA GCTTCAAGCA GAGGCTGTAC AATCAGGCGG GAAAGGGACA GCCAGATTCT ACAATAGCAA AGCCATATCT GTCACAGTTG AGAGCCAAAT GTCCTGCTTC GGGTGGAGAT  AACAATTTGT CGCCCTTAGA TTTTGTGAGC CCGACGAGAT TCGACAACCA GTATTACAAG AACTTAGTGG TGGGGAAGGG GCTGCTTAAC TCCGATCAGG AGCTGTATTC CAGCTCCGGA  AGCCAAACCA TGTCTGTGGC GAAAGGTTAT GCGGCTAATC CATACGCATT TTTCAAGCAA TTCGCTGAGT CGATGGTGAA GATGGGGAAT ATCAGTCCTC TCACCTCCTC CAAAGGAGAA 
ATCAGAAAGA ACTGCCGTAG AATCAATTGA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TTGAGAGGGT AGACACTCGC ATATAACAGT CTGTTATTTT CTCATATTCT TATAAACATT CTCGTTTGCA AAGATGGCCA GGCCGGTCGT TACATTGTCC ATATCGGCGT TTTTGTTCCT  CCTGATTACC TGCTTGCCGG CATTGCATGC ACAATTGACT GCAGACTTCT ACCAAAAGTC GTGTCCGCGA GCGCTCCAGA TTGTGAGGTC AGCAGTGCAG CAGGCGGTGC TTAAAGAAGC  TCGTATGGGG GCGTCTTTAC TTCGTCTTCA TTTTCACGAT TGCTTCGTGC AGGGCTGCGA TGCGTCATTG TTGCTGGATG ACACCTCCAC AATCCGAAGT GAGAAAAGAT CGAATCCAAA  CATGAATTCT GCGAGGGGAT TCGACGTTGT GGATACCATT AAAAGCAAAC TGGAGAGTGC CTGCCCCGGT GTTGTATCTT GTGCCGACAT CCTTGCTATT GCAGCTCGGG ACTCTGTGAT  TCTGAGTGGA GGACCATTCT GGAATGTACT TTTGGGACGG AAGGATTCGA GAACTGCAAG TTTGAGCGGC TCAAACAACA ATATTCCGCC ACCTAATGCA ACACTGCAAA CTCTCATCAC  AAAGTTTAGA AACCAAGGGC TCTCAATCAC AGACTTAGTT GCACTCGTCG GAGGGCATAC AATTGGGCAG TCGAGGTGCA CGAGCTTCAA GCAGAGGCTG TACAATCAGG CGGGAAAGGG  ACAGCCAGAT TCTACAATAG CAAAGCCATA TCTGTCACAG TTGAGAGCCA AATGTCCTGC TTCGGGTGGA GATAACAATT TGTCGCCCTT AGATTTTGTG AGCCCGACGA GATTCGACAA  CCAGTATTAC AAGAACTTAG TGGTGGGGAA GGGGCTGCTT AACTCCGATC AGGAGCTGTA TTCCAGCTCC GGAAGCCAAA CCATGTCTGT GGCGAAAGGT TATGCGGCTA ATCCATACGC  ATTTTTCAAG CAATTCGCTG AGTCGATGGT GAAGATGGGG AATATCAGTC CTCTCACCTC CTCCAAAGGA GAAATCAGAA AGAACTGCCG TAGAATCAAT TGATGTAATG TCACTAACGG 
AGAGATCAGA AATAACTACA TATAACAGAT ATTAGAGCAA TAAATC 

Retrieve as FASTA