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Entry information : BoPrx26_other
Entry ID 3190
Creation 2006-05-26 (Christophe Dunand)
Last sequence changes 2006-05-26 (Christophe Dunand)
Sequence status partial
Reviewer Qiang Li
Last annotation changes 2012-03-05 (Qiang Li)
Peroxidase information: BoPrx26_other
Name BoPrx26_other
Class Class III peroxidase     [Orthogroup: Prx032]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica oleracea (Cauliflower)    [TaxId: 3712 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BoPrx26_other
start..stop		 S start..stop
BrPrx26-1Aa_other 504 0 1..327 1..327
CagraPrx40 488 1.8e-175 1..327 1..327
AhalPrx12 486 8.07e-175 1..327 1..327
AtPrx26 483 1.65e-173 1..327 1..327
Literature and cross-references BoPrx26_other
Literature Ayele,M., Haas,B.J., Kumar,N., Wu,H., Xiao,Y., Van Aken,S., Utterback,T.R., Wortman,J.R., White,O.R. and Town,C.D. Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis. Genome Res. 15 (4), 487-495 (2005)
DNA ref. GenBank:   BZ508753 [5' end]  CC954849 [3' end]
Protein sequence: BoPrx26_other
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   327 (302)
PWM (Da):   %s   30255.17 (27688.7) Transmb domain:   %s   i7-29o
PI (pH):   %s   8.46 (8.47) Peptide Signal:   %s   cut: 26 range:26-327
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAMIKLILSV LVLGAINLFP GTAEASVMGP TMQKLTWHYY KVYNTCENAE NFVRHQVEKL YRNDTTIAPK LLRLLYSDCF VTGCDASGLL EGPNSERKAP QNTGLGAVVI IDKIKKVLEQ  RCPGVVSCAD ILNLATRDAV Hxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxGSHSM GRTHCSHIVD RLYNFNKTGK PSPTMNKSFL SEMANKCPPR 
TKKGQTDPLV YLNPDSGSNH SFTSSFYSRV LSNKSVLEVD QQLLYNDDTK QISEEFSESF EDFRKSFALS MSKMGSINVL TKNEGEI 

Retrieve as FASTA  
Remarks Partial sequence from 3 GSS. Exon 1 and 2 and intron 1 and 2: BZ508753, Intron 3 (at least 240 nt) and Exon 4: CC954849, BZ508762. No overlap between the two fragments. Containing motif 'YSDC'.