View Redoxidase 3246

Entry information : PtPrx100 (POPTR_0001s04870 / PT01G01130 / Potri.001G011500)

Entry ID	3246
Creation	2006-06-06 (Claudia Cosio)
Last sequence changes	2006-06-06 (Claudia Cosio)
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2012-03-07 (Qiang Li)

Peroxidase information: PtPrx100 (POPTR_0001s04870 / PT01G01130 / Potri.001G011500)

Name (synonym)

PtPrx100 (POPTR_0001s04870 / PT01G01130 / Potri.001G011500)

Class

Class III peroxidase [Orthogroup: Prx004]

Taxonomy

Eukaryota Viridiplantae Streptophyta Salicaceae Populus

Organism

Populus trichocarpa (Western balsam poplar) [TaxId: 3694 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	PtPrx100 start..stop	S start..stop
PkPrx01	632	0	1..318	1..318
PalPrx06	612	0	9..318	1..310
PpePrx78	456	6.51e-163	3..318	6..324
PpePrx73	455	1.2e-162	3..318	6..324

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	3736928..3737131	202	N° 2	3736633..3736821	187	N° 3	3736255..3736417	161	N° 4	3735731..3736131	399
complement(join(3735731..3736131,3736255..3736417,3736633..3736821,3736928..3737 131))

Literature and cross-references PtPrx100 (POPTR_0001s04870 / PT01G01130 / Potri.001G011500)

DNA ref.	Phytozome 12: scaffold_1 (3737131..3735731)
Omic ref.	ePlant: Potri.001G011500

Protein sequence: PtPrx100 (POPTR_0001s04870 / PT01G01130 / Potri.001G011500)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	318 (297)
PWM (Da):	34227.8 (32004.7)
PI (pH):	4.31 (4.35)	Peptide Signal:	cut: 22 range:22-318

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MSSVLATVICVVMLFWGISDAQLSPTFYASTCPNVSSIVRGVVEQ
AARNDVRLGAKLIRMHFHDCFVDGCDGSILLVDANGINSEQDELPNQSVEGYGVVDDIKTAVENVCPGIVSCADILALASEILVTLAGGPTWQVPLGRRDSTTANAARTSDIPSPFETFENLSLKFSNKELDSTDLVALSGAH
TFGRSQCQFFSQRLNDTNPDPTLDTTYLQTLRQACPQGGNPSRLNNLDPTTPDDFDNNYFTNLQNNRGLLQTDQILFSTSGADTVAVVNRFANSQTAFFDSFAQSMIKLGNLSPLTGSNG
EIRADCKRVN

Retrieve as FASTA

Remarks

Complete sequence from genomic (3 introns).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGTCTTCTGTTCTAGCTACAGTGATATGTGTAGTAATGTTGTTTTGGGGCATTTCTGATGCTCAATTAAGCCCCACGTTTTATGCTAGCACTTGCCCGAATGTGTCGAGCATTGTGCGA
GGTGTAGTGGAGCAAGCTGCGCGAAATGATGTCCGGCTTGGAGCCAAGCTCATTCGCATGCACTTCCATGATTGCTTTGTCGATGTAATTATCTTCCATATATAGTTTCTTAATGATTCA
CCTAGCAGAAAGATTTTCTTTATGTATGAAGTACTAATGCACTACTCTTCTTTTCGTATTTTTTTGGCAGGGGGCTGCGATGGCTCTATTCTGCTGGTCGATGCGAATGGCATAAATAGT
GAGCAAGATGAACTCCCTAATCAATCCGTAGAAGGTTATGGTGTCGTTGATGACATTAAAACAGCAGTGGAGAATGTTTGTCCTGGCATCGTCTCCTGCGCAGATATATTAGCCCTTGCA
TCTGAAATATTGGTTACCTTGGTATAGTATTATCAACCTTTCATAATGACCTTTCTTAATGTATTGCCAGCATCTCATGATGTCATAGGCTAGTTGGTCAAGTAATGAGCTCATAAGTAG
AAAAAACAAAAAAAGGGTTGAAAAACTGAAGATGACTTGTGCTAGCAAGTCTTAGATGAGTTTACTTGAGTTGATTACGAATTTTGTGGCCTTAACAAGTAAATGATATGTTGCAGGCGC
AGGAGGTCCAACATGGCAAGTGCCACTGGGAAGAAGGGATAGTACGACTGCAAACGCAGCAAGAACTTCTGACATTCCTAGCCCTTTCGAAACCTTTGAAAATCTTTCTCTCAAGTTCTC
AAACAAGGAACTTGATTCCACTGATCTAGTTGCTTTATCTGGTAATTAATTAGAAATCTTTCCAAATCTTCCACACCAAAATACAGCACGAACAGCTCTTATTACTTGTGTTTAGCATAC
AGTACTATTGTTTTATGCTTACAAAAGATAAAATGTTATTTCAGGTGTGCACATACATTTGGGAGGTCTCAGTGCCAATTCTTCAGCCAGAGACTCAATGATACAAACCCTGATCCAACC
TTAGACACAACATACTTGCAGACACTTCGCCAAGCATGCCCACAAGGCGGAAATCCAAGTAGATTGAACAATCTTGATCCTACAACTCCTGATGATTTTGACAACAACTACTTCACAAAT
CTTCAGAACAATCGTGGCCTTCTCCAAACTGACCAAATACTCTTTTCTACTAGCGGGGCTGATACTGTTGCCGTAGTCAACCGGTTTGCTAACAGCCAGACCGCCTTCTTTGATAGCTTT
GCTCAGTCTATGATAAAGTTGGGAAATTTAAGTCCTTTGACAGGAAGCAATGGAGAAATCAGAGCCGACTGTAAGAGGGTCAATTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA