1. Browse the Database
  2. View Redoxidase
Entry information : MtPrx08 (Medtr5g022870.1 [4.0] / Medtr5g022870.1 [3.5] / Medtr5g022850.1 [3.0])
Entry ID 335
Creation 2006-06-22 (Christophe Dunand)
Last sequence changes 2010-09-15 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2014-07-15 (Christophe Dunand)
Peroxidase information: MtPrx08 (Medtr5g022870.1 [4.0] / Medtr5g022870.1 [3.5] / Medtr5g022850.1 [3.0])
Name (synonym) MtPrx08 (Medtr5g022870.1 [4.0] / Medtr5g022870.1 [3.5] / Medtr5g022850.1 [3.0])
Class Class III peroxidase    [Orthogroup: Prx015]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation N/D
Tissue types Cotyledons
Flowers
Germinating seeds
Glandular trichome
Immature pods
Leaves
Shoots
Stems
Inducers Colletotrichum inoculation
Insect damage (Spodoptera exigua, Meloidogyne, Aphib)
Pathogen interaction
Repressor N/D
Best BLASTp hits
Perox score E-value MtPrx08
start..stop		 S start..stop
GmPrx06 572 0 1..316 1..316
GmPrx88 571 0 1..316 1..317
LjPrx29 536 0 1..316 1..316
MtPrx92 516 0 17..316 20..319
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 9058839..9059042 202 N° 2 9058524..9058712 187 N° 3 9058215..9058377 161 N° 4 9057716..9058110 393
complement(join(9057716..9058110,9058215..9058377,9058524..9058712,9058839..9059 042))


exon

Literature and cross-references MtPrx08 (Medtr5g022870.1 [4.0] / Medtr5g022870.1 [3.5] / Medtr5g022850.1 [3.0])
Literature Fedorova,M. et al.,unpublished, Grusak,M.A. et al., unpublished.
DNA ref. Phytozome 12:   chr5 (9059042..9057716)
Cluster/Prediction ref. Phytozome Gene 12:   31087928 UniGene:   Mtr.12694
Omic ref. Gene atlas:   Mtr.14592.1.S1_at  Mtr.29089.1.S1_at Legoo:   Mtr.14592.1.S1_at
Protein sequence: MtPrx08 (Medtr5g022870.1 [4.0] / Medtr5g022870.1 [3.5] / Medtr5g022850.1 [3.0])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   316
PWM (Da):   %s   34443.72 Transmb domain:   %s   i7-29o
PI (pH):   %s   9.83
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAVMVTFLNLIIIFSVVSTGKSLSLNYYEKSCHDLEYIVLKTVTDATARDKTVPAALLRMHFHDCFVRGCDASVLLNSKGKNKAEKDGPPNISLHAFYVIDEAKKALEAKCPGVVSCADI
LALAARDAVYLSGGPKWNVPKGRKDGRTSKASETRQLPAPTFNISQLQQSFSQRALSVEDLVALSGGHTLGFSHCSSFQNRIQNFNATHDVDPSLHQSFAAKLKSICPLKNKAKNAGTTM
DPSATNFDNTYYKLILQQKGLFSSDQALLDSPKTKQLVSKFAASQKAFFDAFAKSMIKMSSINGGQEVRKDCRKIN

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 5, 3 introns) and 27 ESTs (TC114005: frame shift, TC133990: intron 1!!, TC133990: genomic!!).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTGTCATGGTTACATTCTTGAATTTGATTATCATTTTTTCAGTGGTTTCTACAGGAAAATCACTCAGCTTAAACTACTATGAAAAATCATGCCATGATCTGGAGTATATAGTTTTG
AAGACTGTGACGGATGCTACTGCTAGGGACAAAACTGTTCCAGCAGCACTTCTCCGAATGCACTTCCATGATTGCTTCGTTCGAGTATTGCTATATTGAACTCCTTTCTTCTTGACATTG
TTTTTTTCCTTTTCTGTTTCCTTTTCCCGCACACCATCTATAAATTTGATTTTTCATTTGCATGTGTCGTTTTTTCCTATACTTTTGAAGGGGGGTGTGATGCATCTGTGCTGCTAAATT
CAAAAGGAAAAAACAAAGCAGAAAAGGATGGACCGCCAAACATTTCATTGCATGCATTCTATGTCATTGATGAAGCAAAGAAAGCATTAGAAGCTAAATGCCCTGGTGTAGTTTCTTGTG
CTGATATTCTTGCTCTCGCAGCAAGGGACGCAGTTTATCTGGTAATAAAACAAAGCCAAGAACCAAAGCTCTCTTTCATTGAGACTCTGTTATGCTGTTTACTTTAGAATTGAAACATGT
AGATATGGAAACTTGTATTTGTAAGTTTCAACTGATAACTGATGGTACATCTATGTATATTCTACAGTCTCTGGAGGACCTAAATGGAATGTTCCAAAAGGAAGAAAAGATGGAAGAACA
TCTAAGGCCAGTGAAACAAGACAATTACCAGCACCAACATTCAACATATCACAGCTGCAGCAAAGCTTCTCACAAAGAGCATTGTCTGTGGAAGACTTGGTAGCTCTGTCAGGTAAGCTA
TTCCTAAAGTTAAAAAACATCAAAACTTCACCATTTTTCATGCTTTCATTTATATCTTAATGGAGTTTGAAGTAACATGTTTTGACCCATATGTAGGAGAGGGCATACCTTAGGCTTCTC
TCACTGCTCATCTTTCCAGAACAGAATCCAAAACTTTAATGCTACACATGACGTGGACCCTTCGTTACATCAATCATTTGCAGCAAAACTAAAATCAATTTGTCCGTTGAAAAATAAGGC
CAAAAATGCTGGCACCACTATGGACCCTTCTGCAACAAATTTCGATAATACATATTACAAGTTGATCCTCCAACAAAAAGGCTTGTTTTCTTCTGATCAGGCTTTGCTTGACAGCCCAAA
GACCAAGCAATTGGTTTCTAAGTTTGCCGCCTCACAAAAGGCTTTCTTTGATGCTTTTGCCAAGTCCATGATAAAAATGAGTAGTATCAATGGTGGGCAAGAAGTTAGGAAGGACTGCAG
AAAGATCAATTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTGTCATGGTTACATTCTTGAATTTGATTATCATTTTTTCAGTGGTTTCTACAGGAAAATCACTCAGCTTAAACTACTATGAAAAATCATGCCATGATCTGGAGTATATAGTTTTG
AAGACTGTGACGGATGCTACTGCTAGGGACAAAACTGTTCCAGCAGCACTTCTCCGAATGCACTTCCATGATTGCTTCGTTCGAGGGTGTGATGCATCTGTGCTGCTAAATTCAAAAGGA
AAAAACAAAGCAGAAAAGGATGGACCGCCAAACATTTCATTGCATGCATTCTATGTCATTGATGAAGCAAAGAAAGCATTAGAAGCTAAATGCCCTGGTGTAGTTTCTTGTGCTGATATT
CTTGCTCTCGCAGCAAGGGACGCAGTTTATCTGTCTGGAGGACCTAAATGGAATGTTCCAAAAGGAAGAAAAGATGGAAGAACATCTAAGGCCAGTGAAACAAGACAATTACCAGCACCA
ACATTCAACATATCACAGCTGCAGCAAAGCTTCTCACAAAGAGCATTGTCTGTGGAAGACTTGGTAGCTCTGTCAGGAGGGCATACCTTAGGCTTCTCTCACTGCTCATCTTTCCAGAAC
AGAATCCAAAACTTTAATGCTACACATGACGTGGACCCTTCGTTACATCAATCATTTGCAGCAAAACTAAAATCAATTTGTCCGTTGAAAAATAAGGCCAAAAATGCTGGCACCACTATG
GACCCTTCTGCAACAAATTTCGATAATACATATTACAAGTTGATCCTCCAACAAAAAGGCTTGTTTTCTTCTGATCAGGCTTTGCTTGACAGCCCAAAGACCAAGCAATTGGTTTCTAAG
TTTGCCGCCTCACAAAAGGCTTTCTTTGATGCTTTTGCCAAGTCCATGATAAAAATGAGTAGTATCAATGGTGGGCAAGAAGTTAGGAAGGACTGCAGAAAGATCAATTAA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGCAGGCATA TGGCGGGACA GATAGCAACA GCTAAAAAAT AATCAAAGTA CTCTTAATTG ACATGGCTGT CATGGTTACA TTCTTGAATT TGATTATCAT TTTTTCAGTG GTTTCTACAG  GAAAATCACT CAGCTTAAAC TACTATGAAA AATCATGCCA TGATCTGGAG TATATAGTTT TGAAGACTGT GACGGATGCT ACTGCTAGGG ACAAAACTGT TCCAGCAGCA CTTCTCCGAA  TGCACTTCCA TGATTGCTTC GTTCGAGGGT GTGATGCATC TGTGCTGCTA AATTCAAAAG GAAAAAACAA AGCAGAAAAG GATGGACCGC CAAACATTTC ATTGCATGCA TTCTATGTCA  TTGATGAAGC AAAGAAAGCA TTAGAAGCTA AATGCCCTGG TGTAGTTTCT TGTGCTGATA TTCTTGCTCT CGCAGCAAGG GACGCAGTTT ATCTGTCTGG AGGACCTAAA TGGAATGTTC  CAAAAGGAAG AAAAGATGGA AGAACATCTA AGGCCAGTGA AACAAGACAA TTACCAGCAC CAACATTCAA CATATCACAG CTGCAGCAAA GCTTCTCACA AAGAGCATTG TCTGTGGAAG  ACTTGGTAGC TCTGTCAGGA GGGCATACCT TAGGCTTCTC TCACTGCTCA TCTTTCCAGA ACAGAATCCA AAACTTTAAT GCTACACATG ACGTGGACCC TTCGTTACAT CAATCATTTG  CAGCAAAACT AAAATCAATT TGTCCGTTGA AAAATAAGGC CAAAAATGCT GGCACCACTA TGGACCCTTC TGCAACAAAT TTCGATAATA CATATTACAA GTTGATCCTC CAACAAAAAG  GCTTGTTTTC TTCTGATCAG GCTTTGCTTG ACAGCCCAAA GACCAAGCAA TTGGTTTCTA AGTTTGCCGC CTCACAAAAG GCTTTCTTTG ATGCTTTTGC CAAGTCCATG ATAAAAATGA  GTAGTATCAA TGGTGGGCAA GAAGTTAGGA AGGACTGCAG AAAGATCAAT TAAAAAGCCT TAATTTAGTT GAAGTTAATT ATGATATTTC AGACAAATTA TTGTGTGAAA AGTGGTGAAT  CACATTTTGA AGATGGTAAT AAAATTGTGT GTTTTCATTT ATAGAGATAT GTATTCTTTT TTTGCTTTTT AAGAAGCAGA GATATGTATT CTTATATCAG TGTTATAAAA ATTCAAACTT 
GTCTTGGCG 

Retrieve as FASTA