Entry information : PpaPrx18
Entry ID 3429
Creation 2006-07-28 (Christophe Dunand)
Last sequence changes 2006-07-28 (Christophe Dunand)
Sequence status complete
Reviewer Filippo Passardi
Last annotation changes 2012-01-05 (Qiang LI)
Peroxidase information: PpaPrx18
Name PpaPrx18
Class Class III peroxidase    [Orthogroup: Prx243]
Taxonomy Eukaryota Viridiplantae Streptophyta Funariaceae Physcomitrella
Organism Physcomitrella patens    [TaxId: 3218 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PpaPrx18
start..stop
S start..stop
PpaPrx09 418 9.94e-148 14..335 9..329
PpaPrx19 413 1.03e-145 7..337 6..325
TruPrx01 413 1.75e-145 4..332 1..324
PtaPrx102 322 7.81e-110 18..332 5..314
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '3429' 'join(715727..715978,716246..716437,716593..716761,716916..717325)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 715727..715978 250 N° 2 716246..716437 190 N° 3 716593..716761 167 N° 4 716916..717325 408
join(715727..715978,716246..716437,716593..716761,716916..717325)


exon

Literature and cross-references PpaPrx18
Literature Nishiyama,T., Fujita,T., Sakakibara,K., Shin-i,T., Kohara,Y. and Hasebe,M. Physcomitrella patens EST from young sporophytes with surrounding archegonia. Unpublished (2005)
DNA ref. Phytozome 12:   scaffold_60 (715727..717325)
Cluster/Prediction ref. UniGene:   Ppa.8192
Protein sequence: PpaPrx18
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   340 (310)
PWM (Da):   %s   36959.04 (34091.4) Transmb domain:   %s   i13-35o
PI (pH):   %s   8.39 (7.98) Peptide Signal:   %s   cut: 31 range:31-340
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MKAMGASGAVMAVRVLSVVVLLAVVSTVGAEAVVASGLLTTDYYA
RSCPRLSSIVKEEVQKAVKVEKRMAASLVRLHFHDCFVH
GCDGSILLDDTATFIGEKTAAANNNSARGFEVIDGIKAKLEEACPKTVSCADILALASRDSAVEVGLSERYPVFVGRLDSLNASRDEANLRLPSPRANYSELKKNFEFQGLNEVDLIALSGAHTIGKVRCQIVRLFLNDTDTNAEFRSNLAKECPAGGDDFKLQNLDLKTPEKFDNNYFKNLRRGEGIIRSDQTLWSTPGINQAIVWDFARNQKTFFRQFAFSTIKMGNIRPPAGTKGEI
RENCRAVNSAPLVASE

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns) and 47 ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAGGCGATGGGGGCTTCGGGAGCTGTGATGGCGGTGCGGGTTCTGTCGGTTGTGGTGCTGCTGGCGGTAGTGTCTACCGTCGGCGCTGAAGCTGTAGTAGCTTCGGGTTTGTTAACC
ACGGACTACTACGCCCGTTCGTGCCCTCGACTCTCCTCAATTGTCAAGGAAGAGGTTCAGAAGGCTGTGAAGGTCGAGAAACGGATGGCGGCTTCCCTTGTTCGCCTCCATTTTCATGAT
TGCTTCGTCCAT
ATGTGAGTACTGTGTCGCCGATGCCGAGGTCGTGTCAGAATGATGTCTGGAGCATGGTCGGTGGTGACTGTCTCACTCTACTACTAGTTCGGTTGTGGAAATTAAGGA
CAGGCACGGTTTTAGTACTCGACTATATGTGTGTCAAAAGAACGGTTTCCATGGCCATGTTGTTGGAATTGTAGTTACTACACGATTTTGAACAGGCAATAGATTTTTGGCGCTGCGGCC
TTTGTGTTGCGAAGTACTTGGCTGAGTTGGAGTTTTGGTAGGGATGCGATGGGTCAATTCTATTGGATGATACGGCAACTTTCATCGGAGAAAAGACTGCAGCCGCAAATAACAATTCAG
CAAGAGGTTTTGAGGTGATTGACGGTATTAAGGCCAAGTTAGAGGAGGCTTGTCCAAAAACAGTGTCGTGTGCGGATATTCTTGCACTCGCTTCGAGGGACTCTGCTGTTGAG
AGGTAAA
TATATTCATCTCTGCAGACTGGCGTTGTGATGTTCACATCACAACTCACAATGGAAGATATACTGTGGTTAAACAATTTCTTGTATCTTTCAATTTCTGCAAGCTCATCGGAAGTTTGTG
TTCACATGGGGCCCTGGTTGCATGTCGCAGGTGGGATTGTCCGAGAGATATCCAGTGTTCGTCGGTCGTCTCGACAGCCTGAACGCAAGTCGCGATGAAGCCAATTTAAGACTACCATCT
CCTCGAGCCAATTACAGCGAACTAAAAAAGAACTTTGAATTTCAAGGACTTAACGAAGTTGATCTTATCGCACTCTCAG
AGGTACTAAGTTCTAGTTGCAATTCTAAACTATACTCCAGT
ACAGATACGACAAGTCGGCAACGATTAGAGACTGATATGATGAGCTAGACAAAGTAGCACTGAGCTACCGATTTACACTTTTCATGCCTGATTCTCTCATTTGTGGCATTCTCAGGTGCT
CACACAATTGGCAAAGTCAGATGCCAGATTGTCAGGCTCTTCCTGAACGACACCGACACCAACGCTGAATTCCGCAGTAACCTTGCTAAAGAGTGTCCAGCGGGTGGAGACGACTTCAAA
TTGCAAAACCTGGATCTTAAAACCCCTGAAAAATTCGACAATAACTATTTCAAGAATTTGCGAAGAGGCGAGGGTATTATCCGAAGCGATCAGACGCTGTGGAGCACGCCGGGCATTAAT
CAAGCCATTGTCTGGGACTTTGCTCGCAATCAGAAGACTTTCTTCCGACAGTTTGCCTTCAGTACCATCAAGATGGGCAATATCAGACCTCCCGCTGGCACAAAGGGAGAAATCAGAGAG
AATTGCAGGGCGGTGAACTCTGCTCCCCTTGTTGCATCCGAGTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAGGCGATGGGGGCTTCGGGAGCTGTGATGGCGGTGCGGGTTCTGTCGGTTGTGGTGCTGCTGGCGGTAGTGTCTACCGTCGGCGCTGAAGCTGTAGTAGCTTCGGGTTTGTTAACC
ACGGACTACTACGCCCGTTCGTGCCCTCGACTCTCCTCAATTGTCAAGGAAGAGGTTCAGAAGGCTGTGAAGGTCGAGAAACGGATGGCGGCTTCCCTTGTTCGCCTCCATTTTCATGAT
TGCTTCGTCCAT
GGATGCGATGGGTCAATTCTATTGGATGATACGGCAACTTTCATCGGAGAAAAGACTGCAGCCGCAAATAACAATTCAGCAAGAGGTTTTGAGGTGATTGACGGTATT
AAGGCCAAGTTAGAGGAGGCTTGTCCAAAAACAGTGTCGTGTGCGGATATTCTTGCACTCGCTTCGAGGGACTCTGCTGTTGAG
GTGGGATTGTCCGAGAGATATCCAGTGTTCGTCGGT
CGTCTCGACAGCCTGAACGCAAGTCGCGATGAAGCCAATTTAAGACTACCATCTCCTCGAGCCAATTACAGCGAACTAAAAAAGAACTTTGAATTTCAAGGACTTAACGAAGTTGATCTT
ATCGCACTCTCAG
GTGCTCACACAATTGGCAAAGTCAGATGCCAGATTGTCAGGCTCTTCCTGAACGACACCGACACCAACGCTGAATTCCGCAGTAACCTTGCTAAAGAGTGTCCAGCG
GGTGGAGACGACTTCAAATTGCAAAACCTGGATCTTAAAACCCCTGAAAAATTCGACAATAACTATTTCAAGAATTTGCGAAGAGGCGAGGGTATTATCCGAAGCGATCAGACGCTGTGG
AGCACGCCGGGCATTAATCAAGCCATTGTCTGGGACTTTGCTCGCAATCAGAAGACTTTCTTCCGACAGTTTGCCTTCAGTACCATCAAGATGGGCAATATCAGACCTCCCGCTGGCACA
AAGGGAGAAATCAGAGAGAATTGCAGGGCGGTGAACTCTGCTCCCCTTGTTGCATCCGAGTAG

Retrieve as FASTA