1. Browse the Database
  2. View Redoxidase
Entry information : PpaPrx31 (Phpat.010G064700 / Pp1s381_53V6)
Entry ID 3442
Creation 2008-08-06 (Christophe Dunand)
Last sequence changes 2014-01-16 (Qiang Li)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2014-01-16 (Qiang Li)
Peroxidase information: PpaPrx31 (Phpat.010G064700 / Pp1s381_53V6)
Name (synonym) PpaPrx31 (Phpat.010G064700 / Pp1s381_53V6)
Class Class III peroxidase    [Orthogroup: Prx063]
Taxonomy Eukaryota Viridiplantae Streptophyta Funariaceae Physcomitrella
Organism Physcomitrella patens    [TaxId: 3218 ]
Cellular localisation Apoplastic
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PpaPrx31
start..stop		 S start..stop
PpaPrx29 478 9.26e-172 1..325 1..321
PpaPrx51 456 7.02e-163 1..326 1..320
PpaPrx55 451 6.67e-161 1..326 1..320
PpaPrx14 310 2.91e-105 28..326 39..337
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '3442' 'complement(join(11374401..11374958,11375162..11375341,11375502..11375744))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 11375502..11375744 241 N° 2 11375162..11375341 178 N° 3 11374401..11374958 556  
complement(join(11374401..11374958,11375162..11375341,11375502..11375744))


exon

Literature and cross-references PpaPrx31 (Phpat.010G064700 / Pp1s381_53V6)
Literature Rensing,S. et al., The genome of the moss Physcomitrella patens reveals evolutionary insights into the conquest of land by plants. Science (2008).
DNA ref. Phytozome 12:   scaffold_381 (342401..343743)
Protein sequence: PpaPrx31 (Phpat.010G064700 / Pp1s381_53V6)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   326 (292)
PWM (Da):   %s   35174.14 (30916.2) Transmb domain:   %s   i7-29o
PI (pH):   %s   8.11 (4.89) Peptide Signal:   %s   cut: 28 range:28-319
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGRWASTGFLAIFITIAIAIAIVMNLIIPAGAHKGLEVGFYRNSCPEVETIVYKSMAQSYKTNMTVAPGVLRLAFHDCFVRGCDAFVLLDGPNTERKSVLNGGLHGYDAVDAAKRATEKA
CPGIVSAPDVLQFAARDSVILTGGYRWSVPAGRLDGTISLITEATDVNLDLPNMTLSQLVARFREKGLSALxMVVLSGFHTIGKAPCLTFDDRVQTNPVDPTLAPSFAASLKKQCLYAQI
TSTKVALDSTPRRFDTQYFKDIIQGRGVLISDQELLYDSRTVGVVRANKGSAFYRNFGEAMVAMSELGVLTDGSGEIRRQIDQVNT*

Retrieve as FASTA  
Remarks Complete sequence from genomic (introns 1 and 2). no EST. Frame shift just before VALS. Incorrect prediction from Phytozome (PS is missing and extra intron due to the frame shift). Missing 'c'.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGGAGGTGGGCCTCAACGGGCTTCCTGGCGATCTTCATCACGATCGCCATCGCCATCGCCATCGTCATGAATTTAATCATCCCAGCAGGAGCTCACAAGGGACTGGAGGTCGGGTTC
TATCGTAACAGCTGTCCCGAAGTCGAGACCATCGTGTACAAGTCCATGGCTCAATCCTATAAGACAAACATGACCGTTGCACCCGGAGTTCTTCGGCTGGCGTTCCACGACTGCTTCGTG
CGGGTGAGAGATCGTCGTGCTTTGTAGTGCCCCAGCCAGCTAGAACGACTCGCACGCACTTGAGCTGAGAAGCAACGGGTTTGTGATTGCAGTGTTCCCGAGTGATCTTCTATACATGTC
TCATACTGTGACTAAATCATCTTCGTGTGTGGGGCTGCTTCAGGGGGTTGCGACGCTTTCGTGCTGCTAGATGGACCGAACACAGAGCGAAAGTCGGTATTGAATGGCGGACTCCATGGC
TATGATGCCGTCGACGCCGCAAAAAGGGCTACGGAGAAGGCTTGCCCAGGCATAGTCTCAGCCCCGGATGTGTTGCAGTTCGCCGCCCGTGACTCAGTTATACTGGCAAGCTATCCTCCT
GACTTGTGGATGTGAAGGTGGCAGTGCGTGTGGATCCATGTTCCGTCGCTGCTCGGATGTCGATCCCCACCTTGGCCTGATCGCACACGAGTCGCATTGAACGATCCCGGAGCACATCAC
ATCCCATACTGTGCGGTTGATTATCAGGCTCTCGTTTCTGACCTGTGGATCGCGCCTTGCGTCTCCAGACACTGGAGGCTACCGATGGAGCGTGCCCGCTGGGCGTCTAGACGGGACGAT
TTCCCTCATCACGGAGGCAACGGATGTGAACCTAGACCTTCCGAACATGACCCTGTCTCAACTCGTAGCAAGGTTCCGGGAGAAGGGCTTGAGCGCTCTCNTAATGGTAGTCCTGTCAGG
TTTCCACACCATCGGAAAAGCTCCATGCCTTACATTCGACGACCGCGTTCAGACGAACCCGGTAGACCCAACTCTAGCTCCCAGCTTCGCGGCGTCCTTGAAGAAGCAGTGCCTGTATGC
ACAGATCACTTCGACCAAAGTGGCCCTGGATTCCACCCCGCGGAGATTCGACACCCAGTACTTCAAGGACATCATCCAAGGAAGAGGCGTGTTGATCTCGGACCAGGAACTGCTGTATGA
CTCGCGCACCGTAGGGGTGGTGCGCGCCAACAAGGGCAGTGCGTTTTACCGAAACTTCGGCGAGGCGATGGTGGCGATGAGCGAGCTCGGGGTGCTCACAGATGGTTCCGGCGAAATTCG
CAGACAGATCGACCAAGTGAACACGTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGGAGGTGGGCCTCAACGGGCTTCCTGGCGATCTTCATCACGATCGCCATCGCCATCGCCATCGTCATGAATTTAATCATCCCAGCAGGAGCTCACAAGGGACTGGAGGTCGGGTTC
TATCGTAACAGCTGTCCCGAAGTCGAGACCATCGTGTACAAGTCCATGGCTCAATCCTATAAGACAAACATGACCGTTGCACCCGGAGTTCTTCGGCTGGCGTTCCACGACTGCTTCGTG
CGGGGTTGCGACGCTTTCGTGCTGCTAGATGGACCGAACACAGAGCGAAAGTCGGTATTGAATGGCGGACTCCATGGCTATGATGCCGTCGACGCCGCAAAAAGGGCTACGGAGAAGGCT
TGCCCAGGCATAGTCTCAGCCCCGGATGTGTTGCAGTTCGCCGCCCGTGACTCAGTTATACTGACTGGAGGCTACCGATGGAGCGTGCCCGCTGGGCGTCTAGACGGGACGATTTCCCTC
ATCACGGAGGCAACGGATGTGAACCTAGACCTTCCGAACATGACCCTGTCTCAACTCGTAGCAAGGTTCCGGGAGAAGGGCTTGAGCGCTCTCNTAATGGTAGTCCTGTCAGGTTTCCAC
ACCATCGGAAAAGCTCCATGCCTTACATTCGACGACCGCGTTCAGACGAACCCGGTAGACCCAACTCTAGCTCCCAGCTTCGCGGCGTCCTTGAAGAAGCAGTGCCTGTATGCACAGATC
ACTTCGACCAAAGTGGCCCTGGATTCCACCCCGCGGAGATTCGACACCCAGTACTTCAAGGACATCATCCAAGGAAGAGGCGTGTTGATCTCGGACCAGGAACTGCTGTATGACTCGCGC
ACCGTAGGGGTGGTGCGCGCCAACAAGGGCAGTGCGTTTTACCGAAACTTCGGCGAGGCGATGGTGGCGATGAGCGAGCTCGGGGTGCTCACAGATGGTTCCGGCGAAATTCGCAGACAG
ATCGACCAAGTGAACACGTAG

Retrieve as FASTA