View Redoxidase 3501

Entry information : SbAPx02 (Sobic.002G431100.1 [2.1] / Sb02g044060 [1.4])

Entry ID	3501
Creation	2006-08-16 (Felipe Teixeira)
Last sequence changes	2006-08-16 (Felipe Teixeira)
Sequence status	complete
Reviewer	Messaoudi
Last annotation changes	2014-08-04 (Messaoudi)

Peroxidase information: SbAPx02 (Sobic.002G431100.1 [2.1] / Sb02g044060 [1.4])

Name (synonym)

SbAPx02 (Sobic.002G431100.1 [2.1] / Sb02g044060 [1.4])

Class

Ascorbate peroxidase [Orthogroup: APx2001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum

Organism

Sorghum bicolor [TaxId: 4558 ]

Cellular localisation

Cytosolic

Tissue types

Callus
Flowers
Inflorescences
Leaves
Ovaries
Roots
Seedlings
Seeds

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SbAPx02 start..stop	S start..stop
ZmAPx02	509	0	1..250	1..250
SiAPx02	497	0	1..250	1..250
HvAPx03	480	5.24e-175	3..250	4..251
TaAPx04-1B	480	6.21e-175	3..250	4..251

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	77865528..77865646	117	N° 2	77865252..77865426	173	N° 3	77865078..77865143	64	N° 4	77864161..77864209	47
N° 5	77863582..77863667	84	N° 6	77863412..77863491	78	N° 7	77863162..77863264	101	N° 8	77863006..77863064	57
N° 9	77862904..77862919	14
complement(join(77862904..77862919,77863006..77863064,77863162..77863264,7786341 2..77863491,77863582..77863667,77864161..77864209,77865078..77865143,77865252..7 7865426,77865528..77865646))

Literature and cross-references SbAPx02 (Sobic.002G431100.1 [2.1] / Sb02g044060 [1.4])

DNA ref.	Phytozome 12: chromosome_2 (77865646..77862904)
Cluster/Prediction ref.	UniGene: Sbi.798

Protein sequence: SbAPx02 (Sobic.002G431100.1 [2.1] / Sb02g044060 [1.4])

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	250 (316)
PWM (Da):	27071.66 (34354.4)	Transmb domain:	o225-244i358-380o406-428i
PI (pH):	5.15 (8.55)	Peptide Signal:	cut: 33 range:33-348

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MVKAYPTVSEDYLKAVDKAKRKLRGLIAEKNCAPLMLRLAWHSAGTFDVATKTGGPFGTMKNPAEQAHGANAGLEIAVRLLEPIKEQFPILSYADFYLAGVVAVEVTGGPDVPFHPGRQDKPEPPPEGRLPDATQGSDHLRQVFSTQMGLSDQDIVALS
GGHTGRCHKDRSGFEGAWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPSFRPLVDKYADEDAFFADYAEAHLKLSELGFAEA

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 2, 8 introns) and 96 ESTs.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGTGAAGGCCTACCCCACGGTGAGTGAGGACTACCTCAAGGCGGTCGACAAGGCCAAGCGCAAGCTCCGCGGCCTCATCGCTGAGAAGAACTGCGCCCCGCTCATGCTCCGCCTCGCG
TAAGCCCTCTCCCACTTCTTCTTCGCCCGATCCCGATCCCGATCCGATTCGGAAATCCCGAAACTACTTCCACTCCCAACTCCTTCCTTCCTCCTCGCAGCTCTGGCACTCCGCGGGCAC
CTTCGATGTGGCCACCAAGACCGGGGGGCCCTTCGGCACCATGAAGAACCCCGCCGAGCAGGCGCACGGAGCCAACGCCGGACTGGAAATTGCCGTCAGGCTGCTAGAGCCTATCAAGGA
GCAGTTCCCCATCCTATCCTATGCTGACTTCTACCAGGTTACCTGCCTGCCTGAGATTGCAACTCTGATCACCCATCCATTCGTCTGATTCTATCTAGATTGACTAACGAATTTTATGGT
CTTATTCACTGTGTGGTTGTTGCAGCTCTTGCCGGAGTCGTGGCAGTTGAGGTAACCGGCGGACCTGATGTCCCCTTCCACCCTGGGAGGCAGGTGAGGCGGATTCCTTTTTCTAATAAC
CCTTTTTAGTTTTATTATATTATTATTAGATAGAAAAAAATCATCAAGCCCCAGCCTAACCCAACCCAAACCAGAGATTTTGTTAGGGTTTAAGCAAAATAAACCCTAGTCGCTACCAAT
TGTACCTGCGACACCCTGGCTCGCTGACACGTGCTCATGCGTAGCACATGGTGGCTTAACTCCAGCCTCTGTTGGCTTTAGCTATTACCATACATTCTGGATTCATGTGATGCTAGTTCT
TGCAATCCCTCATCGTGTGGACAATGATTTCAGATGTTTCTCAGGTTGGATGGACCGTTGATAGGTTGGCAATTGACATTTACCCCTTTTATGTGCCACGTTTAAAATTCTTGTGAATTT
GTGATAGTGTATTGGTTTGCCAAATAAAATTCCCTAGCTACATTATCAGCCCGTCACATGAGAGAGTGGTAATATTAGGAGGACAGTTGTGCCATGGAGCTAGTTGATCTGCTGCATAGG
GTCCATATGCATTAGATGCTATTTTGCGTGTTTGTTCATATAGTAGTATATTACTCATTCTGCAGATGTTTTGACTGTTCGCTGGCCAGCTTCTGGTTAAATAGATGGTGATCGTGTAAT
TAGTAACTAGCTATGTCCTGTGACCTGTGTGTAGCATTTTATCCAGTCCTTAAAATACTTGTTCTAGTTTATCGCCTAAGACTCTTGCCTTGGGTTAGTAGTATTTCTATTTGTTCGCTG
TAGAAGCTACATCATCTGCTAGTGGGAATATGTTATTATGCTTTGTTTCAGACTGCAGTTTCTTTACTGTATTGATCTTCTAGCTGTGGCTGTTGATGAAATCATTGTTTTTATTCTGTA
GGAGACAAGCCTGAGCCTCCGCCAGAAGGCCGCCTTCCTGATGCCACCCAAGGTACAGGCCTTGTTTAGTTCCGAAAAAAATTCGGATTTTGACACTGTAGCACTTTCGTTTGTTTGTGA
CAAATAATATTCAACTATAGACTAACTAGGATCAAAAGATTCGTCTTGTGATTTACACCTAAACTGTGTAATTAGTTTTTTTTCGTATATATTTAATGCTTCATGCAAGTGCTATAAGAT
TCGATGTGACGGGGAATCTTGAAAACTTTTTGGTTTTCGGGGTGAACTAAACAAGGCCACAATTATAGAATTCCTCTGATATTGCTGAAGCTTCTGCCTTGATGTAGGCATGCTTCTGGG
TGCACTGTGTGTGATCCTTCTTTGACTATACAAGAAATCTACTCAGTTAGTGCATAAGAATTCGTGAGGAACATTTGATCTGAGTTCTTGGATTGCCTTCTTTGTCGTGTCAAGGATAAA
GTTAGAATGTTTCTCAATGGTACAAATGGGATAGGTGGACTTACTGGTTTGGTCTCTTGTATCAGGTGTTCTGATCACCTCAGGCAGGTTTTCTCCACACAGATGGGTTTGAGCGACCAG
GACATTGTTGCACTTTCTGGTGGTCACACCCTGGTTGGTGGAACTGGTCACCTAGCCTGTGTATTTTTTTGGGTGTTTGGCAACTTGAAAGGTGGTGCTTATGCAGAATTGTCTCTCTTG
TAGGGGGAAGATGCCACAAGGATAGATCTGGGTTTGAGGGAGCCTGGACATCCAACCCTTTAATCTTTGACAACTCTTACTTCACGTACGTGATCTGTTTCTTTTGAAGAAGGCAACTCT
TATTTCTACTCATACCATGTTTTGTTGGTTAAACTGAATAGCTGTGTTACAATCCTGGAGCATGAACTCTGACACGAGTCTTCATTAAGATAAGTTGAATAAACTATGACAGGGGGAGCT
TCTGAGTGGAGAGAAGGAAGGCCTTCTACAGCTACCAAGTGACAAAGCCCTCCTCTCTGATCCATCCTTCCGCCCACTTGTTGACAAATATGCAGCGGTATGTCATTTAATCCTTGCATA
GTTCTCATTTGTTGGGGAGTCGGCCTTTAGCTTGCAGGTTTATGATACCTGTGATGATTTTGCCTGATTTGTAGGAGATGAGGACGCTTTCTTTGCTGACTACGCCGAGGCCCACCTGAA
GCTTTCCGAATTGGGGTAAGTGGTGCTGATCGGTCTCTCCCCGTGATCGAATGCCTGTTTACTACTAGGGCAACAAACACTAAATCTCTTGCACTGTGCAGATATTTGCTGAGGCGTAA

Retrieve as FASTA

CDS►
Send to BLAST