View Redoxidase 3502

Entry information : SbAPx01 (Sobic.001G410200.1 [2.1] / Sb01g038760 [1.4])

Entry ID	3502
Creation	2006-08-23 (Felipe Teixeira)
Last sequence changes	2006-08-23 (Felipe Teixeira)
Sequence status	complete
Reviewer	Messaoudi
Last annotation changes	2014-08-04 (Messaoudi)

Peroxidase information: SbAPx01 (Sobic.001G410200.1 [2.1] / Sb01g038760 [1.4])

Name (synonym)

SbAPx01 (Sobic.001G410200.1 [2.1] / Sb01g038760 [1.4])

Class

Ascorbate peroxidase [Orthogroup: APx2001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum

Organism

Sorghum bicolor [TaxId: 4558 ]

Cellular localisation

Cytosolic

Tissue types

Callus
Flowers
Inflorescences
Leaves
Roots
Seedlings
Seeds

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SbAPx01 start..stop	S start..stop
ZmAPx05	494	1.72e-180	1..250	1..250
ZmAPx01	493	5.05e-180	1..250	1..250
SiAPx01	491	4.3e-179	1..250	1..250
PamAPx01	484	1.57e-176	1..250	1..250

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	62243186..62243304	117	N° 2	62242894..62243068	173	N° 3	62242728..62242793	64	N° 4	62241394..62241442	47
N° 5	62241165..62241250	84	N° 6	62240996..62241075	78	N° 7	62240736..62240838	101	N° 8	62240604..62240662	57
N° 9	62240513..62240528	14
complement(join(62240513..62240528,62240604..62240662,62240736..62240838,6224099 6..62241075,62241165..62241250,62241394..62241442,62242728..62242793,62242894..6 2243068,62243186..62243304))

Literature and cross-references SbAPx01 (Sobic.001G410200.1 [2.1] / Sb01g038760 [1.4])

DNA ref.	Phytozome 12: chromosome_1 (62243304..62240513)
Cluster/Prediction ref.	UniGene: Sbi.3729

Protein sequence: SbAPx01 (Sobic.001G410200.1 [2.1] / Sb01g038760 [1.4])

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	250 (253)
PWM (Da):	27128.77 (27539.8)	Transmb domain:	i7-24o
PI (pH):	5.91 (5.15)	Peptide Signal:	cut: 17 range:17-269

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAKSYPTVSAEYSEAVEKARQKLRALIAEKSCAPLMLRLAWHSAGTFDVSSRTGGPFGTMKNPAELAHGANAGLDIAVRLLEPIKEEFPILSYADFYLAGVVAVEVTGGPQIPFHPGREDKPQPPPEGRLPDATKGSDHLRQVFGKQMGLSDQDIVALS
GGHTGRCHKERSGFEGAWTSNPLVFDNSYFKELLSGDKEGLLQLPSDKALLSDPAFRPLVDKYADEKAFFEDYKEAHLKLSELGFADA

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 1, 8 introns) and 77 ESTs.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCGAAGAGCTACCCGACCGTGAGCGCCGAGTACAGCGAGGCCGTCGAGAAGGCCAGGCAAAAGCTCCGCGCCCTCATCGCCGAGAAGAGCTGCGCCCCACTCATGCTCCGCCTCGCG
TAAGCCTCCCTACCTCCACCTACCTCCCGTCCTCCCTGCGCGCGCATTTCTAGATCTTTGTGGGGGAGTTTTTTTTTTTCAGTCGCCTGATCTGGGTTTCCCGTTCGATCGCGCAGGTGT
GGCACTCCGCCGGGACGTTCGACGTGTCGTCGAGGACCGGCGGTCCCTTCGGCACGATGAAGAACCCGGCGGAACTGGCGCATGGCGCCAACGCGGGGCTGGACATCGCGGTGCGGCTGC
TCGAGCCCATCAAGGAGGAGTTCCCCATCCTCTCTTACGCCGATTTCTACCAGGTCGGTCCCCGATCTCGCATCGATCTGGTTCGATGATTCGATCTGCCCGAATGGATGTGCGTTCTGA
CCGCGTACCTTTCTCTCTCTGCTCCTTTTGCAGCTCTCGCGGGAGTTGTGGCCGTGGAGGTCACTGGTGGGCCTCAGATCCCCTTCCACCCCGGTAGGGAGGTGAGATTTTTCAACCATT
TGTTAACTGTCTTTGGGGTTTAGCAGGGTTTAAGGTTTTGTTTAGAAATCTCCGAGGAGGTGGGTGTGAAGGTCGTTTAGTGAGATCGTGTTTGTTTACTCCAACTAGTACCATCGATCT
ATGTGCGATTTATCACCTGTTTGGTAAATCCCTCGTGCAATTAGCTATAACCATTTATTCCTGGGATGCTACAATTAACCTTTATTTTGAGATTTGTGTCCACGCATCTTTCCGCTCTGT
GGCTCTGTCCCTGTGTGTTCATTGTTTCGGCTTGAAGTGGCCACTAGTTTAGGTTTTGATTAGTCTATAAATATCATCTTCGAATGGTGGGCCATTGTGCGCTAAAAATAATTTAGCGGT
TTACTGTAGTGTTCGTCAAATATATGAGATGCAGCTTTCACTATGTGTATAGCTCAGTCCTTGTCTCTCATAGACGTGATAGGAGAGTCATATTAACTATATGCTTGTTTCATACTTTTT
CCTATGATGAGAAAATGATGTCACTAATAACTTATCAAAACTTATGTTTAGAAGCTATTCCTAACACCAGTGGTTCTTTTGTGTTAGTTTTGTATAGGACAATGTCCATATAGCCTTCAT
TTTTGAAAACTTATCGAAAAAATAATTGATCGTTTTATCATTTTGTATTGGTGTTCTCCATACATACTTATGTCACCCTGCCTGTTGGATTCTTGTCATCTTGCACATATATTGTGTTGA
GTAGGTAGGTCATGGTCATGTGATGAGGTATCATAGTGTTGCCAAACCAGTTTGCCCTTATCCTGTTATACATATATGTGTTGGCCAATACAATACCATATCATATGTCGTTATCTCTTT
ATTGTGGAGGTCCACTTGTTGGGTCCTTGGATGCACAGTATGTTTGTTGTAAGTGTGCGTCTAGGCATTTCATGCCGTCTAGATAGTGTTGGTTGCCTTACCCTGATGGTGATGTGCACT
ATGCATATTATGCACCTATACGGTCCCTGTTGATATGCTGTCAAATTATACATGTATAGACCATAAACTTTCTGCATGTTGTCCAATGCTGATACTATTTTCCCTTGATTGTCATTACAA
TTTGTTGGGTGACAATTATTTAACATTTGGTGTTAAAGTTGTTCAATTCTATCACTTATGTCTTGCTTTCTTAAAACTATAGCGATAGGCATGACTGACTGATATTATTTGTTCCATGCC
TTTTTCGCCGTCAGTATTTGTCACTGTAAAAACTTGAGTATTTACATCTTCCCTTGTCTTTTTCAGGAGACAAGCCTCAGCCCCCACCCGAGGGCCGTCTTCCTGATGCCACTAAGGGTA
GATCTCTAATCTTCACTACGATTGTCATGAATGCTGAATTGATTGGTTATATTCACCATGTATCCTTCAAGGCGTTGACGTCACTTTTATTGACATGATGACCGACTCTTATTCCTTGCT
TGCTGTTTTTTATTAACCAGGTGTTCTGACCACCTGAGGCAAGTCTTTGGCAAGCAGATGGGTCTGAGCGACCAGGACATTGTTGCCCTTTCTGGTGGCCACACCTTGGTTTGTTACTGC
CCACTCATGTTTCCTTCAGAAATGTATGTAATATATGTATGCTTGAACTGATTTACTTTTATTTGAGGTTTTCTTAGGGGGAAGGTGCCACAAAGAGCGGTCTGGTTTTGAGGGGGCCTG
GACTTCAAACCCTTTGGTCTTCGACAACTCTTACTTCAAGTGAGTCTGTGTCATGTTTACTATGAAAAGCAACTGCATTTAGTTAAGAAATACTAAGAATTTATTTGCCTTTGTTATGTC
TTTCCTGGGCAGCTGTAAATACTATACTATACTAGAAATTAATAGCTATCCCATATATCCTGAACTTATTCTGTAGGGGGAACTTCTGAGTGGTGACAAGGAGGGCCTTCTTCAGCTCCC
AAGTGACAAAGCCCTGCTGAGCGACCCTGCCTTCCGCCCTCTTGTGGATAAATATGCTGCGGTATGTCCGTCATTGTTTTCTAGGGTAAGGTGATCTGCAGGGAGATAAGTACTGATTAT
TGTGTGCCTTGTAGGAGATGAGAAGGCATTCTTTGAAGACTACAAAGAAGCCCACCTCAAGCTCTCCGAACTGGGGTGAGTAACCAGTGATTGCACAATTTGTGCTTGGTCAGTGGGACA
AATCTGATTGTTTACTCTCCTGGAATGCAGGTGTTCGCTGATGCTTAA

Retrieve as FASTA

CDS►
Send to BLAST