Entry information : MtPrx30 (Medtr2g029730.1[4.0] / Medtr2g029730.1[3.5])
Entry ID 355
Creation 2006-01-18 (Christophe Dunand)
Last sequence changes 2013-12-31 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2014-07-29 (Christophe Dunand)
Peroxidase information: MtPrx30 (Medtr2g029730.1[4.0] / Medtr2g029730.1[3.5])
Name (synonym) MtPrx30 (Medtr2g029730.1[4.0] / Medtr2g029730.1[3.5])
Class Class III peroxidase    [Orthogroup: Prx237]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation N/D
Tissue types Roots
Seedlings
Inducers Aphanomyces euteiches infection
Pathogen interaction
Repressors Glomus intraradices infection
Glomus mosseae infection
Best BLASTp hits
Perox score E-value MtPrx30
start..stop
S start..stop
MtPrx111 592 0 1..345 1..344
GmPrx01 522 0 1..340 1..343
PvPrx01 469 3.08e-167 23..345 22..348
MsPrx02 462 1e-164 1..345 1..355
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '355' 'join(11103288..11103497,11104103..11104294,11104394..11104559,11104678..11105147)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 11103288..11103497 208 N° 2 11104103..11104294 190 N° 3 11104394..11104559 164 N° 4 11104678..11105147 468
join(11103288..11103497,11104103..11104294,11104394..11104559,11104678..11105147 )


exon

Literature and cross-references MtPrx30 (Medtr2g029730.1[4.0] / Medtr2g029730.1[3.5])
Literature REFERENCE 1. Nyamsuren,O. et al., Physiol.Mol.Plant Pathol. 63(1),17-26(2003)
REFERENCE 2. Natalija Hohnjec, Martin F. Vieweg, Alfred Puhler, Anke Becker, and Helge Kuster. Overlaps in the Transcriptional Profiles of Medicago truncatula Roots Inoculated with Two Different Glomus Fungi Provide Insights into the Genetic Program Activated during Arbuscular Mycorrhiza. Plant Physiol. 137: 1283-1301(2005).
DNA ref. Phytozome 12:   chr2 (11103288..11105147)
EST ref. GenBank:   BF643750.1 [5' end]  CA922444.1 [3' end]
Cluster/Prediction ref. Phytozome Gene 12:   31063423 UniGene:   Mtr.10842
Omic ref. Gene atlas:   Mtr.43507.1.S1_at Legoo:   Mtr.43507.1.S1_at
Protein sequence: MtPrx30 (Medtr2g029730.1[4.0] / Medtr2g029730.1[3.5])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   345 (322)
PWM (Da):   %s   37305.77 (34845.5) Transmb domain:   %s   i5-27o
PI (pH):   %s   6.61 (6.23) Peptide Signal:   %s   cut: 24 range:24-345
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGSMRIVLGVALWCAVLMHTGYAQLSPSFYSQTCPFLYPIVFRVI
YEASHTDPRIGASLIRLHFHDCFVQ
GCDGSVLLNNTDTIVSEQDAFPNRNSLKRLDVVNKIKTAVEEECPNTVSCADILTIAAEVSSILGGGPSWPIPLGRRDSLTANITLANQNLPGPFSTLDQLKASFLVQGLNTTDLVTLSG
AHTFGRARCSAFINRLYNFSGTGNPDPTLNTTYLQTLRLICPQNSTGNNLANLDLTTPNHFDNKYYSNLQNLNGLLHSDQVLLSTPNADTIAIVNSFSNNQSLFFLNFRVSMIKMANIGV
LTGDEGEIRLQCNFVNGNSAGLARGGSKDGLLSSL

Retrieve as FASTA  
Remarks Complete sequece from 16 ESTs and genomic. (chromo 2, 3 introns).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGTTCCATGCGTATTGTACTAGGGGTTGCACTTTGGTGTGCAGTCTTGATGCATACAGGATATGCTCAGCTTAGTCCCTCATTTTACAGCCAAACATGTCCATTTCTATACCCTATT
GTGTTTAGAGTCATCTATGAGGCTTCCCACACTGATCCACGTATTGGTGCCAGTCTCATCAGGCTTCATTTTCATGATTGCTTTGTTCAA
AAGTATGTTATTATCTATTGATTGTTATGT
TCATCCATATAAATGCTCAGCCTATGTATATAAGATCAATATTTCTAACTTTTTTACTCTAGGGTTTTGCAATTACAACCGACTTTTTCTTTGAATTGAACACTATAATGTTAATTTTGA
ACTTTTTTTTACTATACTGATATGGTGTTGAAAAAGTTAGTAGCCAAAGTTCTTTACCAAAGAAGAAATATAGGTTCGATCTATTCCTTAATTCGTCTATGATAAAAGAAGCCTAATCAT
GTTTGCAAGGAAAAAATGAATGCTCTTATGTCGTCTATAAGATTTTCAGTGGAATTCAATAATCAACTATACCGATACACTTCAAATAAAATAAAGATTTAAATATGATTTTAGTCAATG
CATTATAGCATTTTTAACTCCCAACGTTAACTTATTGGATCCTAAGACATGATTTTAATTATTGGGCCACAGACTCTAAGAACAATTATAATATTCGTAAAGACTAAATTTAAATAAAAA
ACTATCACGTATTAAAATAAAAATATACTAGAAATGTAAGGAACAAAATCATATTTAACCCTAAAATAAAGTAAATGAAAAGTCTTTTTTGTGACAGGGCTGTGATGGATCAGTTTTGTT
GAACAACACTGATACAATTGTGAGTGAACAAGATGCATTTCCAAACAGAAACTCATTAAAGCGTTTGGATGTTGTGAATAAAATCAAGACAGCAGTTGAAGAAGAATGTCCTAACACTGT
TTCTTGTGCTGATATTCTTACTATTGCAGCTGAAGTATCTTCTATTCTG
TGGTATGTTTTTAATTTCATAAACTTTATATGGTCACTAGTAATTTTTGCTTCTCAAATATCCATCTTAAA
ATCATCTAATATATATTGATCTATGAACAGGGAGGAGGTCCCTCATGGCCAATTCCATTGGGAAGAAGGGATAGCTTAACCGCCAACATAACTCTTGCAAATCAAAACCTTCCCGGACCC
TTCTCCACATTGGATCAACTTAAAGCTTCATTTCTTGTTCAAGGTCTCAACACTACAGATTTAGTTACACTCTCAG
AGGTATAAATCATAAAAAAAAAAAGTTTTATAGCTATTTAAACC
TTTTCTAGCATGCCGTTGTAATTAAACTCAGAGAAATATTACACACCATGTCATTAACCTAAATATTTTTTTATAGGTGCTCATACATTTGGAAGAGCTCGTTGCAGTGCATTCATCAAC
CGTCTATACAATTTCAGTGGCACTGGAAATCCTGATCCAACATTAAACACAACTTACTTACAAACATTGCGTCTGATATGTCCCCAAAATTCAACAGGAAACAACCTAGCCAATTTGGAC
CTTACCACACCTAATCACTTTGATAACAAATATTACTCCAATCTTCAAAACCTCAATGGCTTACTTCATAGTGATCAAGTTCTATTATCCACTCCTAATGCAGACACCATTGCTATTGTT
AATAGCTTTAGCAATAACCAATCTCTCTTCTTTCTGAATTTTAGGGTTTCGATGATTAAAATGGCGAATATTGGAGTGTTAACTGGTGATGAAGGGGAGATTAGGTTGCAATGTAATTTT
GTAAATGGTAACTCCGCTGGATTAGCTCGTGGTGGATCAAAAGATGGCTTGTTAAGCTCACTCTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGTTCCATGCGTATTGTACTAGGGGTTGCACTTTGGTGTGCAGTCTTGATGCATACAGGATATGCTCAGCTTAGTCCCTCATTTTACAGCCAAACATGTCCATTTCTATACCCTATT
GTGTTTAGAGTCATCTATGAGGCTTCCCACACTGATCCACGTATTGGTGCCAGTCTCATCAGGCTTCATTTTCATGATTGCTTTGTTCAA
GGCTGTGATGGATCAGTTTTGTTGAACAAC
ACTGATACAATTGTGAGTGAACAAGATGCATTTCCAAACAGAAACTCATTAAAGCGTTTGGATGTTGTGAATAAAATCAAGACAGCAGTTGAAGAAGAATGTCCTAACACTGTTTCTTGT
GCTGATATTCTTACTATTGCAGCTGAAGTATCTTCTATTCTG
GGAGGAGGTCCCTCATGGCCAATTCCATTGGGAAGAAGGGATAGCTTAACCGCCAACATAACTCTTGCAAATCAAAAC
CTTCCCGGACCCTTCTCCACATTGGATCAACTTAAAGCTTCATTTCTTGTTCAAGGTCTCAACACTACAGATTTAGTTACACTCTCAG
GTGCTCATACATTTGGAAGAGCTCGTTGCAGT
GCATTCATCAACCGTCTATACAATTTCAGTGGCACTGGAAATCCTGATCCAACATTAAACACAACTTACTTACAAACATTGCGTCTGATATGTCCCCAAAATTCAACAGGAAACAACCTA
GCCAATTTGGACCTTACCACACCTAATCACTTTGATAACAAATATTACTCCAATCTTCAAAACCTCAATGGCTTACTTCATAGTGATCAAGTTCTATTATCCACTCCTAATGCAGACACC
ATTGCTATTGTTAATAGCTTTAGCAATAACCAATCTCTCTTCTTTCTGAATTTTAGGGTTTCGATGATTAAAATGGCGAATATTGGAGTGTTAACTGGTGATGAAGGGGAGATTAGGTTG
CAATGTAATTTTGTAAATGGTAACTCCGCTGGATTAGCTCGTGGTGGATCAAAAGATGGCTTGTTAAGCTCACTCTAA

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGTTCCA TGCGTATTGT ACTAGGGGTT GCACTTTGGT GTGCAGTCTT GATGCATACA GGATATGCTC AGCTTAGTCC CTCATTTTAC AGCCAAACAT GTCCATTTCT ATACCCTATT  GTGTTTAGAG TCATCTATGA GGCTTCCCAC ACTGATCCAC GTATTGGTGC CAGTCTCATC AGGCTTCATT TTCATGATTG CTTTGTTCAA GGCTGTGATG GATCAGTTTT GTTGAACAAC  ACTGATACAA TTGTGAGTGA ACAAGATGCA TTTCCAAACA GAAACTCATT AAAGCGTTTG GATGTTGTGA ATAAAATCAA GACAGCAGTT GAAGAAGAAT GTCCTAACAC TGTTTCTTGT  GCTGATATTC TTACTATTGC AGCTGAAGTA TCTTCTATTC TGGGAGGAGG TCCCTCATGG CCAATTCCAT TGGGAAGAAG GGATAGCTTA ACCGCCAACA TAACTCTTGC AAATCAAAAC  CTTCCCGGAC CCTTCTCCAC ATTGGATCAA CTTAAAGCTT CATTTCTTGT TCAAGGTCTC AACACTACAG ATTTAGTTAC ACTCTCAGGT GCTCATACAT TTGGAAGAGC TCGTTGCAGT  GCATTCATCA ACCGTCTATA CAATTTCAGT GGCACTGGAA ATCCTGATCC AACATTAAAC ACAACTTACT TACAAACATT GCGTCTGATA TGTCCCCAAA ATTCAACAGG AAACAACCTA  GCCAATTTGG ACCTTACCAC ACCTAATCAC TTTGATAACA AATATTACTC CAATCTTCAA AACCTCAATG GCTTACTTCA TAGTGATCAA GTTCTATTAT CCACTCCTAA TGCAGACACC  ATTGCTATTG TTAATAGCTT TAGCAATAAC CAATCTCTCT TCTTTCTGAA TTTTAGGGTT TCGATGATTA AAATGGCGAA TATTGGAGTG TTAACTGGTG ATGAAGGGGA GATTAGGTTG  CAATGTAATT TTGTAAATGG TAACTCCGCT GGATTAGCTC GTGGTGGATC AAAAGATGGC TTGTTAAGCT CACTCTAAAT AAGTTAATTG ATATGTGATT GAAAGGGTAA ACATTGTAAG 
ATATATACTT AATTAGAATA AATAAAAAGT GTGCATGTCA ATATGATTTT GTCATGTACA TCTTATCAT 

Retrieve as FASTA