Entry information : MtPrx[P]69 ( Medtr1g098320.1 [4.0] / Medtr1g098320.1 [3.5] / Medtr1g124800.1 [3.0])
Entry ID 3579
Creation 2006-12-22 (Christophe Dunand)
Last sequence changes 2014-07-30 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Catherine Mathe
Last annotation changes 2016-04-12 (Catherine Mathe)
Peroxidase information: MtPrx[P]69 ( Medtr1g098320.1 [4.0] / Medtr1g098320.1 [3.5] / Medtr1g124800.1 [3.0])
Name (synonym) MtPrx[P]69 ( Medtr1g098320.1 [4.0] / Medtr1g098320.1 [3.5] / Medtr1g124800.1 [3.0])
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value MtPrx[P]69
start..stop
S start..stop
VaPrx01 166 5e-51 74..184 244..357
VaPrx01 101 3e-26 2..102 3..112
GmPrx314 164 3e-50 72..183 241..351
GmPrx314 110 2e-29 1..87 1..95
CaraPrx01 157 3e-49 74..179 105..208
GmPrx20 161 3e-49 72..183 241..351
GmPrx20 114 4e-31 1..87 1..95
Literature and cross-references MtPrx[P]69 ( Medtr1g098320.1 [4.0] / Medtr1g098320.1 [3.5] / Medtr1g124800.1 [3.0])
Literature Lin S., Dixon R., May G., Sumner L., Gonzales B., Cook D., Kim D., Roe B.A.; Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases.
DNA ref. Phytozome 12:   chr1 (44266112..44265285)
Cluster/Prediction ref. Phytozome Gene 12:   31092733
Omic ref. Gene atlas:   Mtr.49528.1.S1_at Legoo:   Mtr.49528.1.S1_at
Protein sequence: MtPrx[P]69 ( Medtr1g098320.1 [4.0] / Medtr1g098320.1 [3.5] / Medtr1g124800.1 [3.0])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   184 (154)
PWM (Da):   %s   20428.29 (17046.6)  
PI (pH):   %s   8.98 (8.93) Peptide Signal:   %s   cut: 33 range:31-184
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAYASCRSAF FTFLLILTFL SFSHIKVSEA QAKPPPIVKE GxLSWTFYDS KCPKIFNDDV GQAAGFRRLH FHACFVQGCD GSVLLDGLRS PNKFDNKYYL DLMNHQGLFT SDQDLYTDKR 
TKDIVTNFAV NQSLFFEKFV AAMLKMGQLN VLTGTKGEIR ANCSVRNKGS KSFLTSAVEG FLEM 

Retrieve as FASTA  
Remarks Pseudogene from genomic. No EST. Incorrect prediction from phytozome (SCADIL and VALS are missing; Same sequence found in a second contig (AC148397.13)).
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCTTATG CTTCTTGTAG GAGTGCTTTC TTCACCTTTC TTCTAATTCT TACCTTTCTT TCATTTTCCC ACATCAAAGT GTCTGAAGCA CAAGCCAAAC CTCCTCCTAT AGTTAAGGAA  GGGAnnCTAT CATGGACCTT CTACGATTCA AAATGTCCTA AGCTTGAATC TATCATCAGA AAAGATCTTC AATGATGATG TTGGTCAAGC TGCTGGCTTT CGTCGCCTTC ACTTCCATGC  CTGCTTTGTC CAGGTAAATA CATTTAATGT ATATTTAGCT TAATTAGTTA GGATCAGCTT ATACTATAAA CAATACTAAT TAAGCATTAC AATGCTTGTA ATTAGCATAT GTGGTGATTA  AATTAGCTAA CTTTGGAAAT CCAAACTTAT TATATTTGGT TATTTATGGA TTAAAAAAAT GAAAATGCAG GGTTGTGATG GATCAGTATT ATTGGATGGA TCAGCAAGTG AGCCAAGTGA  GAAAGATGCA CCACCAAACT TGAGTCTTAG GAAAGAGGCC TTCAAGATAA TCGAAAAACT TCGTAGTCCC AACAAATTTG ATAATAAATA CTACCTTGAT CTTATGAACC ATCAGGGTCT  CTTTACTTCA GACCAAGATT TGTACACTGA TAAGAGGACT AAGGATATTG TTACTAACTT TGCTGTGAAT CAATCTTTGT TCTTTGAGAA ATTTGTTGCT GCTATGCTTA AAATGGGGCA 
GCTTAATGTT TTGACTGGAA CTAAAGGAGA GATTCGAGCT AATTGCTCTG TTAGGAATAA GGGTAGCAAA TCATTTCTTA CTTCTGCTGT GGAAGGATTT TTAGAAATGT GA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCTTATG CTTCTTGTAG GAGTGCTTTC TTCACCTTTC TTCTAATTCT TACCTTTCTT TCATTTTCCC ACATCAAAGT GTCTGAAGCA CAAGCCAAAC CTCCTCCTAT AGTTAAGGAA  GGGAnnCTAT CATGGACCTT CTACGATTCA AAATGTCCTA AGATCTTCAA TGATGATGTT GGTCAAGCTG CTGGCTTTCG TCGCCTTCAC TTCCATGCCT GCTTTGTCCA GGGTTGTGAT  GGATCAGTAT TATTGGATGG ACTTCGTAGT CCCAACAAAT TTGATAATAA ATACTACCTT GATCTTATGA ACCATCAGGG TCTCTTTACT TCAGACCAAG ATTTGTACAC TGATAAGAGG  ACTAAGGATA TTGTTACTAA CTTTGCTGTG AATCAATCTT TGTTCTTTGA GAAATTTGTT GCTGCTATGC TTAAAATGGG GCAGCTTAAT GTTTTGACTG GAACTAAAGG AGAGATTCGA 
GCTAATTGCT CTGTTAGGAA TAAGGGTAGC AAATCATTTC TTACTTCTGC TGTGGAAGGA TTTTTAGAAA TGTGA 

Retrieve as FASTA