Sequence Properties
first value : protein second value (mature protein)
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Length (aa): |
243 |
PWM (Da): |
25854.33 |
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PI (pH):
| 9.25 |
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Sequence 0
Send to BLAST
Send to Peroxiscan
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
SLLINSTKAN MAEKDSGTND SVRGYNLIDE AKKTLEAACP STxSCADIIT LATRDTVALS RGPKYNLWTG RRDRLVSNIN DVNIPGSDSP VSVTLQFFAS KGITKQEMVT LFRAHTVGVA
HCSFFAGRxS RAKPDPTMDP ALNAKLVKLC NSRGDPATPL DQKSSFVFxx EFYKEILAKK GLLQIDQQLA LDAGTKGFVL DFASNGDKFQ KGFANAIVKM GEIDVLVGNQ GEIRKKCSVF
NRN
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Retrieve as FASTA
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Remarks |
Partial or pseudogene sequence from genomic (exon 1 is missing, two frame shift in the exon 4). No prediction from phytozome. |
DNA ►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
TCCCTACTCA TAAACTCCAC CAAGGCCAAC ATGGCAGAGA AAGATTCCGG CACCAACGAC AGCGTTCGGG GCTACAACCT CATCGACGAA GCGAAGAAAA CCCTCGAGGC AGCATGTCCT
TCAACTGnnT CATGTGCAGA CATCATAACC CTAGCAACCA GAGACACCGT GGCCTTATCA AGAGGACCCA AATACAACCT TTGGACGGGA AGACGCGACA GATTAGTATC CAACATCAAC
GACGTCAACA TTCCAGGATC TGACAGTCCT GTGTCCGTAA CATTACAATT CTTCGCGAGT AAAGGCATAA CAAAACAGGA AATGGTGACC CTTTTCAGAG CACACACCGT TGGTGTTGCA
CATTGTAGTT TCTTTGCTGG CAGAAnnTCT CGGGCGAAAC CTGACCCTAC TATGGACCCT GCATTGAATG CTAAGTTGGT GAAGTTGTGC AACTCGAGAG GGGATCCAGC TACACCTTTG
GATCAGAAAA GTTCTTTTGT TTTTTnnnnn GAGTTTTATA AGGAGATTCT TGCGAAGAAA GGATTGCTGC AGATTGATCA GCAGCTTGCA TTGGATGCGG GTACCAAAGG GTTTGTATTG
GATTTCGCTT CGAATGGTGA TAAGTTCCAA AAGGGTTTTG CGAATGCGAT TGTAAAGATG GGGGAGATTG ATGTTCTGGT TGGGAATCAA GGTGAAATTC GTAAGAAATG CTCGGTTTTC
AACCGCAACT AG
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Retrieve as FASTA
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CDS►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
TCCCTACTCA TAAACTCCAC CAAGGCCAAC ATGGCAGAGA AAGATTCCGG CACCAACGAC AGCGTTCGGG GCTACAACCT CATCGACGAA GCGAAGAAAA CCCTCGAGGC AGCATGTCCT
TCAACTGnnT CATGTGCAGA CATCATAACC CTAGCAACCA GAGACACCGT GGCCTTATCA AGAGGACCCA AATACAACCT TTGGACGGGA AGACGCGACA GATTAGTATC CAACATCAAC
GACGTCAACA TTCCAGGATC TGACAGTCCT GTGTCCGTAA CATTACAATT CTTCGCGAGT AAAGGCATAA CAAAACAGGA AATGGTGACC CTTTTCAGAG CACACACCGT TGGTGTTGCA
CATTGTAGTT TCTTTGCTGG CAGAAnnTCT CGGGCGAAAC CTGACCCTAC TATGGACCCT GCATTGAATG CTAAGTTGGT GAAGTTGTGC AACTCGAGAG GGGATCCAGC TACACCTTTG
GATCAGAAAA GTTCTTTTGT TTTTTnnnnn GAGTTTTATA AGGAGATTCT TGCGAAGAAA GGATTGCTGC AGATTGATCA GCAGCTTGCA TTGGATGCGG GTACCAAAGG GTTTGTATTG
GATTTCGCTT CGAATGGTGA TAAGTTCCAA AAGGGTTTTG CGAATGCGAT TGTAAAGATG GGGGAGATTG ATGTTCTGGT TGGGAATCAA GGTGAAATTC GTAAGAAATG CTCGGTTTTC
AACCGCAACT AG
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Retrieve as FASTA
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