Entry information : MtPrx65 (Medtr1g086320.1 [4.0] / Medtr1g086320.1[3.5] / Medtr1g106040.1[3.0])
Entry ID 3806
Creation 2006-12-22 (Christophe Dunand)
Last sequence changes 2006-12-22 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-07-29 (Messaoudi)
Peroxidase information: MtPrx65 (Medtr1g086320.1 [4.0] / Medtr1g086320.1[3.5] / Medtr1g106040.1[3.0])
Name (synonym) MtPrx65 (Medtr1g086320.1 [4.0] / Medtr1g086320.1[3.5] / Medtr1g106040.1[3.0])
Class Class III peroxidase    [Orthogroup: Prx014]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value MtPrx65
start..stop
S start..stop
MtPrx87 631 0 1..333 1..340
GmPrx106 469 3e-168 1..333 2..319
GmPrx332 468 2e-167 4..333 5..324
GmPrx192 468 2e-167 4..333 5..324
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 38628498..38629499 1002  
join(38628498..38629499)


exon

Literature and cross-references MtPrx65 (Medtr1g086320.1 [4.0] / Medtr1g086320.1[3.5] / Medtr1g106040.1[3.0])
Literature Shaull S., Lin S., Dixon R., May G., Sumner L., Gonzales B., Cook D., Kim D., Roe B.A.; Submitted (MAR-2006).
Protein ref. UniProtKB_Uniparc:   Q1SSV6
DNA ref. Phytozome 12:   chr1 (3862849..38629499)
Cluster/Prediction ref. Phytozome Gene 12:   31094192
Omic ref. Gene atlas:   Mtr.13741.1.S1_at   Mtr.13953.1.S1_at   Mtr.51817.1.S1_s_at Legoo:   Mtr.13741.1.S1_at   Mtr.13953.1.S1_at   Mtr.51817.1.S1_s_at
Protein sequence: MtPrx65 (Medtr1g086320.1 [4.0] / Medtr1g086320.1[3.5] / Medtr1g106040.1[3.0])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   333 (308)
PWM (Da):   %s   36168.48 (33519.0) Transmb domain:   %s   i7-29o
PI (pH):   %s   9.1 (8.92) Peptide Signal:   %s   cut: 26 range:26-333
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MVRMHSILSI ATLVIVILSV STTLASSTSL KYGFYKTTCS SVEAIVRRAV NKAVSLNPGI AAGLIRMHFH DCFVRGCDGS VLLDSIPGIQ SERDHPANNP SLRGFEVINE AKAQIEAACP  KTVSCADILA FAARDSARKV SGGRIDYSVP SGRRDGRVSI FDEVTQNLPP PTFSAEQLID NFDRKGLSVD EMVTLSGAHS IGVSHCSSFS KRLYSFNLTF PQDPSMDPNF ARLLKSKCPP 
PQSQSINPTV VLDGSTPNDL DNMYYKRLKN NRGLLTSDQT LLNSGLTRRM VLKNARHAAI WNVKFAKAMV HMGSLDVLTG SEGEIRERCS VVN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, no intron) and 4 ESTs (BF649013, BF649337, BF648842, BF518656).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTTAGAA TGCATTCAAT ACTCTCTATA GCTACCTTGG TTATAGTTAT TCTCTCAGTT TCAACAACAT TGGCATCATC GACATCTTTG AAGTATGGTT TCTACAAGAC AACATGTTCA  TCCGTAGAGG CAATTGTTAG AAGAGCTGTA AACAAAGCTG TTTCACTCAA CCCCGGCATC GCTGCTGGTT TGATTAGAAT GCATTTTCAT GATTGCTTTG TCAGAGGATG TGATGGTTCT  GTTTTATTAG ATTCCATACC AGGTATTCAA TCTGAGAGAG ACCATCCTGC AAACAATCCA AGTTTACGTG GCTTTGAAGT AATCAACGAA GCTAAGGCAC AAATAGAGGC TGCATGTCCT  AAAACGGTGT CCTGTGCAGA CATTCTTGCT TTTGCAGCTC GAGACAGTGC TCGCAAAGTT AGTGGCGGCA GAATAGACTA CTCAGTACCA TCAGGACGCA GAGATGGTCG AGTGTCTATC  TTCGACGAAG TCACACAAAA TTTACCACCA CCAACTTTCA GTGCGGAGCA ACTTATCGAT AATTTTGATA GAAAAGGTTT GTCAGTAGAT GAAATGGTTA CACTTTCTGG TGCTCATTCT  ATTGGTGTCT CACATTGTTC TTCATTCTCA AAACGATTAT ACTCTTTCAA TTTAACTTTT CCTCAAGATC CTTCTATGGA CCCTAACTTT GCTAGGTTGT TAAAATCTAA GTGTCCACCA  CCACAGTCAC AGAGCATAAA CCCAACTGTG GTGCTTGATG GTAGCACGCC TAATGATTTG GACAACATGT ACTATAAGAG GTTGAAGAAT AATCGTGGTT TATTAACTTC GGATCAAACA  TTGCTTAATA GTGGCTTAAC TAGGAGAATG GTGTTAAAAA ATGCTAGACA TGCTGCAATC TGGAATGTGA AGTTTGCCAA AGCCATGGTG CATATGGGTT CCTTAGATGT GCTGACAGGT 
TCTGAAGGTG AGATTAGGGA GCGTTGTAGC GTTGTTAATT AA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTTAGAA TGCATTCAAT ACTCTCTATA GCTACCTTGG TTATAGTTAT TCTCTCAGTT TCAACAACAT TGGCATCATC GACATCTTTG AAGTATGGTT TCTACAAGAC AACATGTTCA  TCCGTAGAGG CAATTGTTAG AAGAGCTGTA AACAAAGCTG TTTCACTCAA CCCCGGCATC GCTGCTGGTT TGATTAGAAT GCATTTTCAT GATTGCTTTG TCAGAGGATG TGATGGTTCT  GTTTTATTAG ATTCCATACC AGGTATTCAA TCTGAGAGAG ACCATCCTGC AAACAATCCA AGTTTACGTG GCTTTGAAGT AATCAACGAA GCTAAGGCAC AAATAGAGGC TGCATGTCCT  AAAACGGTGT CCTGTGCAGA CATTCTTGCT TTTGCAGCTC GAGACAGTGC TCGCAAAGTT AGTGGCGGCA GAATAGACTA CTCAGTACCA TCAGGACGCA GAGATGGTCG AGTGTCTATC  TTCGACGAAG TCACACAAAA TTTACCACCA CCAACTTTCA GTGCGGAGCA ACTTATCGAT AATTTTGATA GAAAAGGTTT GTCAGTAGAT GAAATGGTTA CACTTTCTGG TGCTCATTCT  ATTGGTGTCT CACATTGTTC TTCATTCTCA AAACGATTAT ACTCTTTCAA TTTAACTTTT CCTCAAGATC CTTCTATGGA CCCTAACTTT GCTAGGTTGT TAAAATCTAA GTGTCCACCA  CCACAGTCAC AGAGCATAAA CCCAACTGTG GTGCTTGATG GTAGCACGCC TAATGATTTG GACAACATGT ACTATAAGAG GTTGAAGAAT AATCGTGGTT TATTAACTTC GGATCAAACA  TTGCTTAATA GTGGCTTAAC TAGGAGAATG GTGTTAAAAA ATGCTAGACA TGCTGCAATC TGGAATGTGA AGTTTGCCAA AGCCATGGTG CATATGGGTT CCTTAGATGT GCTGACAGGT 
TCTGAAGGTG AGATTAGGGA GCGTTGTAGC GTTGTTAATT AA 

Retrieve as FASTA