View Redoxidase 3952

Entry information : AtAPx-R (At4g32320 / APX6)

Entry ID	3952
Creation	2006-09-08 (Filippo Passardi)
Last sequence changes	2015-06-03 (Christophe Dunand)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2015-12-15 (Christophe Dunand)

Peroxidase information: AtAPx-R (At4g32320 / APX6)

Name (synonym)

AtAPx-R (At4g32320 / APX6)

Class

Ascorbate peroxidase related [Orthogroup: APx-R001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis thaliana [TaxId: 3702 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AtAPx-R start..stop	S start..stop
AlyAPx-R	649	0	1..329	1..329
AhalAPx-R01	635	0	1..329	1..329
BstrAPx-R01	590	0	1..329	1..331
CrubAPx-R01	572	0	2..329	3..327

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '3952' 'join(15602777..15602960,15603049..15603151,15603260..15603375,15603897..15603967,15604126..15604168,15604255..15604351,15604445..15604528,15604608..15604729,15604870..15604936,15605132..15605234)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	15602777..15602960	182	N° 2	15603049..15603151	101	N° 3	15603260..15603375	114	N° 4	15603897..15603967	69
N° 5	15604126..15604168	41	N° 6	15604255..15604351	95	N° 7	15604445..15604528	82	N° 8	15604608..15604729	120
N° 9	15604870..15604936	65	N° 10	15605132..15605234	101
join(15602777..15602960,15603049..15603151,15603260..15603375,15603897..15603967 ,15604126..15604168,15604255..15604351,15604445..15604528,15604608..15604729,156 04870..15604936,15605132..15605234)

Literature and cross-references AtAPx-R (At4g32320 / APX6)

Literature	Seki,M., Iida,K., Satou,M., Sakurai,T., Akiyama,K., Ishida,J., Nakajima,M., Enju,A., Kamiya,A., Narusaka,M., Carninci,P. Kawai,J., Hayashizaki,Y. and Shinozaki,K. Arabidopsis thaliana full-length cDNA.
Protein ref.	UniProtKB: Q8GY91
DNA ref.	Phytozome 12: Chr4 (15602777..15605234)
mRNA ref.	GenBank: NM_119384.4
Cluster/Prediction ref.	Phytozome Gene 12: 19644159 UniGene: At.31673
Omic ref.	ATTED-II: At4g32320 e-FP Browser: At4g32320 ePlant: At4g32320 Genevestigator: At4g32320 TAIR: At4g32320

Protein sequence: AtAPx-R (At4g32320 / APX6)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	329
PWM (Da):	36103.6
PI (pH):	9.17

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MTTTTASLVKTFLFRCDSFSSFKFKCKFESPAKTRLLSPATEKHVVRSSRAWRIRCLSDDPGSSHVFVASRRKMVVLLSTVQLLSHMLPQNGNAAEIYPVMQNEIRKVVTKGKAAGVLRL
VFHDAGTFELDDHGGINGSIAYELERPENIGLKKSLVLAKAKVKVDEIQPVSWADMISVAGSEAVSICGGPTIPVVLGRLDSAQPDPEGKLPPETLSASGLKECFKRKGFSTQELVALSG
AHTIGSKGFGDPTVFDNAYYKILLEKPWTSSKMTSMVGLPSDHALVQDDECLRWVKRYAEDQDKFFEDFTNAYIKLVNSGAKWNML

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 4, 9 introns), 4 cDNA and 13 ESTs (TGI: TC254687 + TC268229). Low homology to other APx proteins. Ecotype="Columbia".

Promoter►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

CATCTGCTGC CGATTCTTCG ACTAAAATAC CTAGCGATCT GTGCGGAACA CCTGAGCCTT GCGGGCCTTA CTATGTCTGC TCGGGTTCTA AAGTGTGTGG ATGTGTGTCC GGGTTGTCTC GGGCTCGGTC TGATTGCAAA ACCGGGATTA CTTCTCCCTG TAAGAAAACC AAGGATAATG CAACATTGCC TTTGCAGCTA GTAAGTGCTG GAGACGGTGT AGACTATTTC GCTCTTGGGT ATGCTCCTCC GTTCTCCAAG AAAACTGATC TTGATAGCTG TAAAGAGTTC TGCCACAACA ATTGCTCGTG CCTTGGTCTT TTCTTCCAGA ACAGTTCTGG TAATTGCTTC TTGTTTGATT ATATTGGAAG CTTTAAAACC TCTGGCAATG GAGGCTCTGG GTTTGTGTCT TACATCAAGA TCGCAAGTAC TGGTTCTGGA GGTGGAGATA ACGGAGAAGA TGATGGGAAA CATTTTCCTT ATGTAGTGAT TATTGTCGTG GTAACAGTTT TTATCATCGC TGTTTTGATC TTTGTGGCCT TCCGGATTCA TAAGAGAAAG AAAATGATTT TGGAGGCTCC TCAAGAGAGT TCAGAAGAAG ATAACTTCTT GGAGAACTTA TCCGGGATGC CTATTCGGTT CGCTTACAAA GATCTTCAGT CAGCGACGAA TAACTTCTCG GTGAAGTTAG GTCAAGGAGG GTTTGGATCG GTCTATGAAG GTACTTTACC AGATGGTTCT CGTCTAGCTG TGAAGAAACT TGAAGGAATC GGTCAAGGGA AGAAAGAATT CAGAGCCGAG GTTAGTATAA TCGGAAGTAT TCATCATCTG CACTTGGTGC GGCTAAGAGG ATTCTGCGCA GAAGGGGCTC ATAGGCTGCT CGCATACGAG TTCTTATCCA AAGGTTCGTT GGAGAGATGG ATATTTAGGA AAAAGGATGG CGATGTTCTT CTAGATTGGG ACACAAGATT TAACATAGCA CTCGGAACAG CCAAAGGTTT AGCGTATCTA CATGAAGATT GTGATGCAAG GATTGTTCAC TGCGATATAA AACCCGAGAA CATCCTATTA GACGATAACT TCAATGCCAA GGTATCCGAT TTCGGACTGG CGAAGCTCAT GACCCGCGAA CAAAGCCATG TCTTCACAAC AATGCGCGGG ACAAGAGGCT ACTTGGCTCC AGAATGGATC ACAAACTATG CGATATCAGA GAAGAGTGAT GTTTACAGCT ACGGAATGGT GTTGCTAGAG TTAATAGGAG GAAGAAAGAA CTATGATCCA TCAGAAACTT CGGAGAAATG CCATTTTCCT TCTTTTGCTT TCAAGAAGAT GGAAGAAGGG AAGCTTATGG ATATTGTCGA TGGGAAGATG AAGAATGTTG ATGTGACTGA CGAAAGGGTT CAAAGGGCTA TGAAAACCGC ACTTTGGTGT ATACAAGAAG ATATGCAAAC GAGACCCTCG ATGAGCAAAG TTGTTCAAAT GCTTGAAGGT GTTTTTCCGG TGGTCCAGCC ACCTAGTTCT TCCACTATGG GATCGAGACT TTACTCAAGC TTCTTTAAGT CCATCAGCGA GGACGGCGGT GCTACTACGT CATCTGGACC GTCCGATTGT AACAGTGAGA ATTATCTCTC CGCCGTGAGA CTCTCCGGTC CGAGATAGCA ATCTTTTTAG CCAATTTTTA GTATCTTATA TAATAGGTTT TTGGCTCACC ATGTTTTGTT GTATATTGTT TTTGTGTTAC ATCTTAAAAG AATAGCCATC ACTCAGTTTT GTAACGTTCC GAGATCAATT ATTTCATAGA TTACCCGTCG TTTTTCTTAA CTGTCACAGA ACTCCATGTC GTTTTACATT CGGAATGCGT GCCGTGGTCT TCCTTCTCTC TATCCTACGT TCCTATTGGC TATAATGTTT TGCTTACTGT
ACGCTTGTGG GTAGACAATG AAACTCCCGG TTCATAAATT TGAGCTAGGG TCTCGGAGAC TCTCGTCCCA CCGTTAAAG

Retrieve as FASTA

Terminator +►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

TATCTAATCT AGTTTTATAT TTTGTTAGCT CATAAGTGTT TCAAACATGC CCGAATAATT TGGGTAGTAA TGCTTATTTG CTAATAAGTA AAAATTTCGC TGCTTACTAG TTTACTACTA CGAAACTAAA CATAAAAGAT ACTCAAACTT GACACCAACT TACTTCTATG CCACACCGAA TAATAAATTC GGTGTTTGAT TTGACTTTAC AAAACTAAAA CGATGACGAT TCTAGTCTTC AGTGTTTGAA TTTTATTCAG CAGTCGGACG TTTTGACTTT TAACGAGACG CTAAAACCGC TACGATTTAT GTCGTTTAAG CAGTTATTTA TAAGTTAGGT CGAGTAGATT TTACAATTTA TGTTTTGTTC ATGTAGTAAT TAGACACGAA GAAAAGGAAT AGGTCATGTA CGAATCGTCG TAGGTAGATG TAGTTTTTAT AGGAATATGC CGTTTCTATG TCAAAAGAGA TATTAACATG TGTGTTTTGT CTAACAACCT ATTTTTTTTG GCTACTAGTC ATTATCTCTT ATTATTTAAA ATACATCGTG ATCAAAGAGT AGTACAATCG CATTCAATTG GATAAGATAA AATTTGATAT GTGAATGGTG AAGCGAATCT TCCAACAAGG ATACACACCG ACCAACATAA AAGCAAAATC TATAATAAAA ACTGCTACCA TACTTCACAA TGTATAGAAA TCCAAGTCTC AAGGTGTTGC GACTATTGCC ATACCACGTT GAGATACTAC TACTACTACA TGTATGCGAA AGTTCCAAAA AATAAAATAA TGGAAAAATG AACAATTAAG AATTGATACT CAAAAAGATT CATGGAATTA AAAAAAAAAA AATTGATCTG AAAAAATTCA TTGATAACTA AAGTAGTATA ATCATTTTAC AATACTTATT TGTTATTAAA ACTATAATTC TAATTAACAA TTTACTAATT TAAATTATTT
ATGAAAACAT TATTAGGATA TATCAGTTTT ATGAAAAAA

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGACGACGACGACTGCTTCTCTGGTTAAGACTTTTCTGTTTCGGTGCGACTCGTTTTCATCTTTCAAATTCAAATGCAAATTCGAATCTCCCGCGAAAACGCGATTGCTCTCTCCGGCG
ACCGAGAAACATGTTGTCAGATCGTCAAGAGCCTGGCGTATTCGTTGCTTATCCGATGATCCTGTGGTAAGACCGGATTCTGGTTTCGTTGGCCATTGCTATTTTACTGTTTTCGTTTTC
TTCGACTTGTCCTGGCTAATTGCATAATTTGTAGGTTCGAGTCATGTTTTCGTTGCAAGTAGAAGGAAAATGGTAGTCTTGTTGTCGACGGTGCAGCTTCTGTCTCATATGCTTCCGCAA
AACGGGAACGCAGCTGAGAGTGAGTTTGAACAAATCCTTAATTTTGTGTAATTGACTCTGAATTTGGTTTTTGTTCAAATTATAGTTTTCCAATTTTTTTGTACTAAATTGATAGTTGGA
TTTTCAGGATTTATCCGGTGATGCAAAACGAAATAAGGAAAGTGGTGACAAAGGGCAAGGCTGCTGGTGTGCTTCGTTTAGTGTTTCATGATGCTGGAACCTTTGAACTGGACGATCATT
CTGTGGTAACTTTCCATGACTCTTATGTATTCTGTAATCATCAGAATTTTACTTTCAAGTATAGTATATCTGACTCGTTTGTCAAGTTGCTATTTTGTATAAGTTAGATTGTTTCCTTCA
TTGTAAACTCAACATAGGTGAACATGGATATAGATTTGAAAGTTCCTTTATTTGTTCACTGGTTGGTGATAGACAAGTTTGCAAATGTAAAAATTGTTTGTTAGATTTATGTTTAGAATG
GAATCTGTGAATTTTTGGATGTTTTGGGTAGCTTGTGAATGTTTATTGGCTTAGTTTAATAGACTATCAAGTATTGTGAGAACTGGTTTGTTCAGTGGCTCTCTCAGGATGTTCTTATCA
TTTTACAATTTAATATACCTCAGTTTTGGCTTTGATGAACCAAGCTTGGTTGGTTTAGGTTCAGGTCTTTGCGATTTAGTATACTTCTGCTGGTATTTTCCTTTGTTCTCATTGAAAGAT
ACTGTAACTATGTCTTAGTTCTTCTTGGTAATGAATTCAATTGCAGGTGGCATCAACGGATCTATTGCTTATGAACTTGAGAGACCTGAGAACATAGGTTTGAAGAAATCCTTAAAGAGG
CACTAAATCCCTCTCTTTTATCTGTTGGCGTGAGCTAATAAGGATGTAATTTTCGCATCTATTTTAACTGCTCTTTTTTGTGTCTATTTGCACTTGTTTATCAGATTTGTCTTATTTTCA
AATAAGTAATCTTCGTAGAAAATGGATTCTTTGTTAGGTTCTAGCGAAAGCAAAGGTTAAGGTTGACGAGATACAACCAGAGGTAAATTACTATTTGAACTGTGTGCACCAAAGAAACGT
GTTCTGTTATGCGCCTTTGTGCTAATTTCACATTTTATGTGATCTCAGTGTCTTGGGCGGATATGATCTCTGTCGCTGGGTCTGAAGCAGTTTCAATATGTGGCGGCCCAACAATTCCAG
TAGTTTTGGGAAGACTTGATTCAGCGCGTAAGCACAACATAAACGGTTTTTAATCCTATTGGATAGATCTCTGGTCACTGTTTCTATACTTTTAACAGGGTGATTGTTTCATGTTCACAG

GCAACCTGATCCAGAAGGCAAGCTACCTCCAGAAACCCTGAGTGCCTCGGGATTGAAAGAATGCTTCAAAAGAAAAGGATTTTCTCGTGAGTCCTTAGCTGAGAATTGTTTCACAATGTA
TGTGTATGAGTAACTTAACATCACTGGGTTTGTGTGCCATTCCAGGACCCAGGAGCTTGTTGCCTTATCTGGGGCACATACGATTGGGAGTAAAGGCTTTGGAGATCCGACAGTTTTTGA
CAATGCATACTACAAAATCCTTCTTGAAAAACCATGGACGTCAACTTTTGTAAGTCTCATAAGTCATAACAAGGTTCTTAAGTTCTTTTACTCATAGAGTTTCAGTTTTCTACCATTCCT
CCCTATGTTCTGAAGATTGATTGTAAGACTGAGATTGTATATTTACTTAGTTTTCTTACAATGCTGTAGCTAAGATGACGAGCATGGTCGGGCTTCCTTCGGATCATGCTTTAGTGCAGG
ATGATGAGTGCTTAAGAGGTTTCTCATCTACTCAAAGTTCTTACCTTATCATTTCATCACCTATTTTTCTCTCAAGTACCATTCAAAGTAGATGAACACTTAGAGAGTATAGGATCATTG
GCAAGACTGTAAACTGTTGATCACTGTTCTTGCCATTTGAGTAATCTGGATAACTATTCAACTGATATAGATTCGTGGTTTGATGATGCACAGGTGGGTGAAACGGTATGCAGAAGACCA
AGACAAGTTCTTCGAAGACTTCACAAATGCTTATATCAAACTAGTAAATTCTGGGGCCAAATGGAATATGTTATGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

CTCCCGGTTC ATAAATTTGA GCTAGGGTCT CGGAGACTCT CGTCCCACCG TTAAAGATGA CGACGACGAC TGCTTCTCTG GTTAAGACTT TTCTGTTTCG GTGCGACTCG TTTTCATCTT TCAAATTCAA ATGCAAATTC GAATCTCCCG CGAAAACGCG ATTGCTCTCT CCGGCGACCG AGAAACATGT TGTCAGATCG TCAAGAGCCT GGCGTATTCG TTGCTTATCC GATGATCCTG GTTCGAGTCA TGTTTTCGTT GCAAGTAGAA GGAAAATGGT AGTCTTGTTG TCGACGGTGC AGCTTCTGTC TCATATGCTT CCGCAAAACG GGAACGCAGC TGAGATTTAT CCGGTGATGC AAAACGAAAT AAGGAAAGTG GTGACAAAGG GCAAGGCTGC TGGTGTGCTT CGTTTAGTGT TTCATGATGC TGGAACCTTT GAACTGGACG ATCATTCTGG TGGCATCAAC GGATCTATTG CTTATGAACT TGAGAGACCT GAGAACATAG GTTTGAAGAA ATCCTTAAAG GTTCTAGCGA AAGCAAAGGT TAAGGTTGAC GAGATACAAC CAGTGTCTTG GGCGGATATG ATCTCTGTCG CTGGGTCTGA AGCAGTTTCA ATATGTGGCG GCCCAACAAT TCCAGTAGTT TTGGGAAGAC TTGATTCAGC GCAACCTGAT CCAGAAGGCA AGCTACCTCC AGAAACCCTG AGTGCCTCGG GATTGAAAGA ATGCTTCAAA AGAAAAGGAT TTTCGACCCA GGAGCTTGTT GCCTTATCTG GGGCACATAC GATTGGGAGT AAAGGCTTTG GAGATCCGAC AGTTTTTGAC AATGCATACT ACAAAATCCT TCTTGAAAAA CCATGGACGT CAACTTCTAA GATGACGAGC ATGGTCGGGC TTCCTTCGGA TCATGCTTTA GTGCAGGATG ATGAGTGCTT AAGGTGGGTG AAACGGTATG CAGAAGACCA AGACAAGTTC TTCGAAGACT TCACAAATGC TTATATCAAA CTAGTAAATT CTGGGGCCAA ATGGAATATG TTATGATATC TAATCTAGTT TTATATTTTG TTAGCTCATA AGTGTTTCAA ACATGCCCGA ATAATTTGGG TAGTAATGCT TATTTGCTAA TAAGTAAAAA TTTCGCTGCT TACTAGTTTA CTACTACGAA ACTAAACATA AAAGATACTC AAACTTGACA
CCAACTTACT TC

Retrieve as FASTA