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Entry information : AtAPx-R (At4g32320 / APX6)
Entry ID 3952
Creation 2006-09-08 (Filippo Passardi)
Last sequence changes 2015-06-03 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-12-15 (Christophe Dunand)
Peroxidase information: AtAPx-R (At4g32320 / APX6)
Name (synonym) AtAPx-R (At4g32320 / APX6)
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis thaliana    [TaxId: 3702 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AtAPx-R
start..stop		 S start..stop
AlyAPx-R 649 0 1..329 1..329
AhalAPx-R01 635 0 1..329 1..329
BstrAPx-R01 590 0 1..329 1..331
CrubAPx-R01 572 0 2..329 3..327
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 15602777..15602960 182 N° 2 15603049..15603151 101 N° 3 15603260..15603375 114 N° 4 15603897..15603967 69
N° 5 15604126..15604168 41 N° 6 15604255..15604351 95 N° 7 15604445..15604528 82 N° 8 15604608..15604729 120
N° 9 15604870..15604936 65 N° 10 15605132..15605234 101  
join(15602777..15602960,15603049..15603151,15603260..15603375,15603897..15603967 ,15604126..15604168,15604255..15604351,15604445..15604528,15604608..15604729,156 04870..15604936,15605132..15605234)


exon

Literature and cross-references AtAPx-R (At4g32320 / APX6)
Literature Seki,M., Iida,K., Satou,M., Sakurai,T., Akiyama,K., Ishida,J., Nakajima,M., Enju,A., Kamiya,A., Narusaka,M., Carninci,P. Kawai,J., Hayashizaki,Y. and Shinozaki,K. Arabidopsis thaliana full-length cDNA.
Protein ref. UniProtKB:   Q8GY91
DNA ref. Phytozome 12:   Chr4 (15602777..15605234)
mRNA ref. GenBank:   NM_119384.4
Cluster/Prediction ref. Phytozome Gene 12:   19644159 UniGene:   At.31673
Omic ref. ATTED-II:   At4g32320 e-FP Browser:   At4g32320 ePlant:   At4g32320 Genevestigator:   At4g32320 TAIR:   At4g32320
Protein sequence: AtAPx-R (At4g32320 / APX6)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   329
PWM (Da):   %s   36103.6  
PI (pH):   %s   9.17
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MTTTTASLVKTFLFRCDSFSSFKFKCKFESPAKTRLLSPATEKHVVRSSRAWRIRCLSDDPGSSHVFVASRRKMVVLLSTVQLLSHMLPQNGNAAEIYPVMQNEIRKVVTKGKAAGVLRL
VFHDAGTFELDDHGGINGSIAYELERPENIGLKKSLVLAKAKVKVDEIQPVSWADMISVAGSEAVSICGGPTIPVVLGRLDSAQPDPEGKLPPETLSASGLKECFKRKGFSTQELVALSG
AHTIGSKGFGDPTVFDNAYYKILLEKPWTSSKMTSMVGLPSDHALVQDDECLRWVKRYAEDQDKFFEDFTNAYIKLVNSGAKWNML

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 4, 9 introns), 4 cDNA and 13 ESTs (TGI: TC254687 + TC268229). Low homology to other APx proteins. Ecotype="Columbia".
Promoter►
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Send to cis Analysis
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CATCTGCTGC CGATTCTTCG ACTAAAATAC CTAGCGATCT GTGCGGAACA CCTGAGCCTT GCGGGCCTTA CTATGTCTGC TCGGGTTCTA AAGTGTGTGG ATGTGTGTCC GGGTTGTCTC  GGGCTCGGTC TGATTGCAAA ACCGGGATTA CTTCTCCCTG TAAGAAAACC AAGGATAATG CAACATTGCC TTTGCAGCTA GTAAGTGCTG GAGACGGTGT AGACTATTTC GCTCTTGGGT  ATGCTCCTCC GTTCTCCAAG AAAACTGATC TTGATAGCTG TAAAGAGTTC TGCCACAACA ATTGCTCGTG CCTTGGTCTT TTCTTCCAGA ACAGTTCTGG TAATTGCTTC TTGTTTGATT  ATATTGGAAG CTTTAAAACC TCTGGCAATG GAGGCTCTGG GTTTGTGTCT TACATCAAGA TCGCAAGTAC TGGTTCTGGA GGTGGAGATA ACGGAGAAGA TGATGGGAAA CATTTTCCTT  ATGTAGTGAT TATTGTCGTG GTAACAGTTT TTATCATCGC TGTTTTGATC TTTGTGGCCT TCCGGATTCA TAAGAGAAAG AAAATGATTT TGGAGGCTCC TCAAGAGAGT TCAGAAGAAG  ATAACTTCTT GGAGAACTTA TCCGGGATGC CTATTCGGTT CGCTTACAAA GATCTTCAGT CAGCGACGAA TAACTTCTCG GTGAAGTTAG GTCAAGGAGG GTTTGGATCG GTCTATGAAG  GTACTTTACC AGATGGTTCT CGTCTAGCTG TGAAGAAACT TGAAGGAATC GGTCAAGGGA AGAAAGAATT CAGAGCCGAG GTTAGTATAA TCGGAAGTAT TCATCATCTG CACTTGGTGC  GGCTAAGAGG ATTCTGCGCA GAAGGGGCTC ATAGGCTGCT CGCATACGAG TTCTTATCCA AAGGTTCGTT GGAGAGATGG ATATTTAGGA AAAAGGATGG CGATGTTCTT CTAGATTGGG  ACACAAGATT TAACATAGCA CTCGGAACAG CCAAAGGTTT AGCGTATCTA CATGAAGATT GTGATGCAAG GATTGTTCAC TGCGATATAA AACCCGAGAA CATCCTATTA GACGATAACT  TCAATGCCAA GGTATCCGAT TTCGGACTGG CGAAGCTCAT GACCCGCGAA CAAAGCCATG TCTTCACAAC AATGCGCGGG ACAAGAGGCT ACTTGGCTCC AGAATGGATC ACAAACTATG  CGATATCAGA GAAGAGTGAT GTTTACAGCT ACGGAATGGT GTTGCTAGAG TTAATAGGAG GAAGAAAGAA CTATGATCCA TCAGAAACTT CGGAGAAATG CCATTTTCCT TCTTTTGCTT  TCAAGAAGAT GGAAGAAGGG AAGCTTATGG ATATTGTCGA TGGGAAGATG AAGAATGTTG ATGTGACTGA CGAAAGGGTT CAAAGGGCTA TGAAAACCGC ACTTTGGTGT ATACAAGAAG  ATATGCAAAC GAGACCCTCG ATGAGCAAAG TTGTTCAAAT GCTTGAAGGT GTTTTTCCGG TGGTCCAGCC ACCTAGTTCT TCCACTATGG GATCGAGACT TTACTCAAGC TTCTTTAAGT  CCATCAGCGA GGACGGCGGT GCTACTACGT CATCTGGACC GTCCGATTGT AACAGTGAGA ATTATCTCTC CGCCGTGAGA CTCTCCGGTC CGAGATAGCA ATCTTTTTAG CCAATTTTTA  GTATCTTATA TAATAGGTTT TTGGCTCACC ATGTTTTGTT GTATATTGTT TTTGTGTTAC ATCTTAAAAG AATAGCCATC ACTCAGTTTT GTAACGTTCC GAGATCAATT ATTTCATAGA  TTACCCGTCG TTTTTCTTAA CTGTCACAGA ACTCCATGTC GTTTTACATT CGGAATGCGT GCCGTGGTCT TCCTTCTCTC TATCCTACGT TCCTATTGGC TATAATGTTT TGCTTACTGT 
ACGCTTGTGG GTAGACAATG AAACTCCCGG TTCATAAATT TGAGCTAGGG TCTCGGAGAC TCTCGTCCCA CCGTTAAAG 

Retrieve as FASTA  
Terminator +►
Send to BLAST
Send to cis Analysis
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TATCTAATCT AGTTTTATAT TTTGTTAGCT CATAAGTGTT TCAAACATGC CCGAATAATT TGGGTAGTAA TGCTTATTTG CTAATAAGTA AAAATTTCGC TGCTTACTAG TTTACTACTA  CGAAACTAAA CATAAAAGAT ACTCAAACTT GACACCAACT TACTTCTATG CCACACCGAA TAATAAATTC GGTGTTTGAT TTGACTTTAC AAAACTAAAA CGATGACGAT TCTAGTCTTC  AGTGTTTGAA TTTTATTCAG CAGTCGGACG TTTTGACTTT TAACGAGACG CTAAAACCGC TACGATTTAT GTCGTTTAAG CAGTTATTTA TAAGTTAGGT CGAGTAGATT TTACAATTTA  TGTTTTGTTC ATGTAGTAAT TAGACACGAA GAAAAGGAAT AGGTCATGTA CGAATCGTCG TAGGTAGATG TAGTTTTTAT AGGAATATGC CGTTTCTATG TCAAAAGAGA TATTAACATG  TGTGTTTTGT CTAACAACCT ATTTTTTTTG GCTACTAGTC ATTATCTCTT ATTATTTAAA ATACATCGTG ATCAAAGAGT AGTACAATCG CATTCAATTG GATAAGATAA AATTTGATAT  GTGAATGGTG AAGCGAATCT TCCAACAAGG ATACACACCG ACCAACATAA AAGCAAAATC TATAATAAAA ACTGCTACCA TACTTCACAA TGTATAGAAA TCCAAGTCTC AAGGTGTTGC  GACTATTGCC ATACCACGTT GAGATACTAC TACTACTACA TGTATGCGAA AGTTCCAAAA AATAAAATAA TGGAAAAATG AACAATTAAG AATTGATACT CAAAAAGATT CATGGAATTA  AAAAAAAAAA AATTGATCTG AAAAAATTCA TTGATAACTA AAGTAGTATA ATCATTTTAC AATACTTATT TGTTATTAAA ACTATAATTC TAATTAACAA TTTACTAATT TAAATTATTT 
ATGAAAACAT TATTAGGATA TATCAGTTTT ATGAAAAAA 

Retrieve as FASTA  
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACGACGACGACTGCTTCTCTGGTTAAGACTTTTCTGTTTCGGTGCGACTCGTTTTCATCTTTCAAATTCAAATGCAAATTCGAATCTCCCGCGAAAACGCGATTGCTCTCTCCGGCG
ACCGAGAAACATGTTGTCAGATCGTCAAGAGCCTGGCGTATTCGTTGCTTATCCGATGATCCTGTGGTAAGACCGGATTCTGGTTTCGTTGGCCATTGCTATTTTACTGTTTTCGTTTTC
TTCGACTTGTCCTGGCTAATTGCATAATTTGTAGGTTCGAGTCATGTTTTCGTTGCAAGTAGAAGGAAAATGGTAGTCTTGTTGTCGACGGTGCAGCTTCTGTCTCATATGCTTCCGCAA
AACGGGAACGCAGCTGAGAGTGAGTTTGAACAAATCCTTAATTTTGTGTAATTGACTCTGAATTTGGTTTTTGTTCAAATTATAGTTTTCCAATTTTTTTGTACTAAATTGATAGTTGGA
TTTTCAGGATTTATCCGGTGATGCAAAACGAAATAAGGAAAGTGGTGACAAAGGGCAAGGCTGCTGGTGTGCTTCGTTTAGTGTTTCATGATGCTGGAACCTTTGAACTGGACGATCATT
CTGTGGTAACTTTCCATGACTCTTATGTATTCTGTAATCATCAGAATTTTACTTTCAAGTATAGTATATCTGACTCGTTTGTCAAGTTGCTATTTTGTATAAGTTAGATTGTTTCCTTCA
TTGTAAACTCAACATAGGTGAACATGGATATAGATTTGAAAGTTCCTTTATTTGTTCACTGGTTGGTGATAGACAAGTTTGCAAATGTAAAAATTGTTTGTTAGATTTATGTTTAGAATG
GAATCTGTGAATTTTTGGATGTTTTGGGTAGCTTGTGAATGTTTATTGGCTTAGTTTAATAGACTATCAAGTATTGTGAGAACTGGTTTGTTCAGTGGCTCTCTCAGGATGTTCTTATCA
TTTTACAATTTAATATACCTCAGTTTTGGCTTTGATGAACCAAGCTTGGTTGGTTTAGGTTCAGGTCTTTGCGATTTAGTATACTTCTGCTGGTATTTTCCTTTGTTCTCATTGAAAGAT
ACTGTAACTATGTCTTAGTTCTTCTTGGTAATGAATTCAATTGCAGGTGGCATCAACGGATCTATTGCTTATGAACTTGAGAGACCTGAGAACATAGGTTTGAAGAAATCCTTAAAGAGG
CACTAAATCCCTCTCTTTTATCTGTTGGCGTGAGCTAATAAGGATGTAATTTTCGCATCTATTTTAACTGCTCTTTTTTGTGTCTATTTGCACTTGTTTATCAGATTTGTCTTATTTTCA
AATAAGTAATCTTCGTAGAAAATGGATTCTTTGTTAGGTTCTAGCGAAAGCAAAGGTTAAGGTTGACGAGATACAACCAGAGGTAAATTACTATTTGAACTGTGTGCACCAAAGAAACGT
GTTCTGTTATGCGCCTTTGTGCTAATTTCACATTTTATGTGATCTCAGTGTCTTGGGCGGATATGATCTCTGTCGCTGGGTCTGAAGCAGTTTCAATATGTGGCGGCCCAACAATTCCAG
TAGTTTTGGGAAGACTTGATTCAGCGCGTAAGCACAACATAAACGGTTTTTAATCCTATTGGATAGATCTCTGGTCACTGTTTCTATACTTTTAACAGGGTGATTGTTTCATGTTCACAG

GCAACCTGATCCAGAAGGCAAGCTACCTCCAGAAACCCTGAGTGCCTCGGGATTGAAAGAATGCTTCAAAAGAAAAGGATTTTCTCGTGAGTCCTTAGCTGAGAATTGTTTCACAATGTA
TGTGTATGAGTAACTTAACATCACTGGGTTTGTGTGCCATTCCAGGACCCAGGAGCTTGTTGCCTTATCTGGGGCACATACGATTGGGAGTAAAGGCTTTGGAGATCCGACAGTTTTTGA
CAATGCATACTACAAAATCCTTCTTGAAAAACCATGGACGTCAACTTTTGTAAGTCTCATAAGTCATAACAAGGTTCTTAAGTTCTTTTACTCATAGAGTTTCAGTTTTCTACCATTCCT
CCCTATGTTCTGAAGATTGATTGTAAGACTGAGATTGTATATTTACTTAGTTTTCTTACAATGCTGTAGCTAAGATGACGAGCATGGTCGGGCTTCCTTCGGATCATGCTTTAGTGCAGG
ATGATGAGTGCTTAAGAGGTTTCTCATCTACTCAAAGTTCTTACCTTATCATTTCATCACCTATTTTTCTCTCAAGTACCATTCAAAGTAGATGAACACTTAGAGAGTATAGGATCATTG
GCAAGACTGTAAACTGTTGATCACTGTTCTTGCCATTTGAGTAATCTGGATAACTATTCAACTGATATAGATTCGTGGTTTGATGATGCACAGGTGGGTGAAACGGTATGCAGAAGACCA
AGACAAGTTCTTCGAAGACTTCACAAATGCTTATATCAAACTAGTAAATTCTGGGGCCAAATGGAATATGTTATGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACGACGACGACTGCTTCTCTGGTTAAGACTTTTCTGTTTCGGTGCGACTCGTTTTCATCTTTCAAATTCAAATGCAAATTCGAATCTCCCGCGAAAACGCGATTGCTCTCTCCGGCG
ACCGAGAAACATGTTGTCAGATCGTCAAGAGCCTGGCGTATTCGTTGCTTATCCGATGATCCTGGTTCGAGTCATGTTTTCGTTGCAAGTAGAAGGAAAATGGTAGTCTTGTTGTCGACG
GTGCAGCTTCTGTCTCATATGCTTCCGCAAAACGGGAACGCAGCTGAGATTTATCCGGTGATGCAAAACGAAATAAGGAAAGTGGTGACAAAGGGCAAGGCTGCTGGTGTGCTTCGTTTA
GTGTTTCATGATGCTGGAACCTTTGAACTGGACGATCATTCTGGTGGCATCAACGGATCTATTGCTTATGAACTTGAGAGACCTGAGAACATAGGTTTGAAGAAATCCTTAAAGGTTCTA
GCGAAAGCAAAGGTTAAGGTTGACGAGATACAACCAGTGTCTTGGGCGGATATGATCTCTGTCGCTGGGTCTGAAGCAGTTTCAATATGTGGCGGCCCAACAATTCCAGTAGTTTTGGGA
AGACTTGATTCAGCGCAACCTGATCCAGAAGGCAAGCTACCTCCAGAAACCCTGAGTGCCTCGGGATTGAAAGAATGCTTCAAAAGAAAAGGATTTTCGACCCAGGAGCTTGTTGCCTTA
TCTGGGGCACATACGATTGGGAGTAAAGGCTTTGGAGATCCGACAGTTTTTGACAATGCATACTACAAAATCCTTCTTGAAAAACCATGGACGTCAACTTCTAAGATGACGAGCATGGTC
GGGCTTCCTTCGGATCATGCTTTAGTGCAGGATGATGAGTGCTTAAGGTGGGTGAAACGGTATGCAGAAGACCAAGACAAGTTCTTCGAAGACTTCACAAATGCTTATATCAAACTAGTA
AATTCTGGGGCCAAATGGAATATGTTATGA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CTCCCGGTTC ATAAATTTGA GCTAGGGTCT CGGAGACTCT CGTCCCACCG TTAAAGATGA CGACGACGAC TGCTTCTCTG GTTAAGACTT TTCTGTTTCG GTGCGACTCG TTTTCATCTT  TCAAATTCAA ATGCAAATTC GAATCTCCCG CGAAAACGCG ATTGCTCTCT CCGGCGACCG AGAAACATGT TGTCAGATCG TCAAGAGCCT GGCGTATTCG TTGCTTATCC GATGATCCTG  GTTCGAGTCA TGTTTTCGTT GCAAGTAGAA GGAAAATGGT AGTCTTGTTG TCGACGGTGC AGCTTCTGTC TCATATGCTT CCGCAAAACG GGAACGCAGC TGAGATTTAT CCGGTGATGC  AAAACGAAAT AAGGAAAGTG GTGACAAAGG GCAAGGCTGC TGGTGTGCTT CGTTTAGTGT TTCATGATGC TGGAACCTTT GAACTGGACG ATCATTCTGG TGGCATCAAC GGATCTATTG  CTTATGAACT TGAGAGACCT GAGAACATAG GTTTGAAGAA ATCCTTAAAG GTTCTAGCGA AAGCAAAGGT TAAGGTTGAC GAGATACAAC CAGTGTCTTG GGCGGATATG ATCTCTGTCG  CTGGGTCTGA AGCAGTTTCA ATATGTGGCG GCCCAACAAT TCCAGTAGTT TTGGGAAGAC TTGATTCAGC GCAACCTGAT CCAGAAGGCA AGCTACCTCC AGAAACCCTG AGTGCCTCGG  GATTGAAAGA ATGCTTCAAA AGAAAAGGAT TTTCGACCCA GGAGCTTGTT GCCTTATCTG GGGCACATAC GATTGGGAGT AAAGGCTTTG GAGATCCGAC AGTTTTTGAC AATGCATACT  ACAAAATCCT TCTTGAAAAA CCATGGACGT CAACTTCTAA GATGACGAGC ATGGTCGGGC TTCCTTCGGA TCATGCTTTA GTGCAGGATG ATGAGTGCTT AAGGTGGGTG AAACGGTATG  CAGAAGACCA AGACAAGTTC TTCGAAGACT TCACAAATGC TTATATCAAA CTAGTAAATT CTGGGGCCAA ATGGAATATG TTATGATATC TAATCTAGTT TTATATTTTG TTAGCTCATA  AGTGTTTCAA ACATGCCCGA ATAATTTGGG TAGTAATGCT TATTTGCTAA TAAGTAAAAA TTTCGCTGCT TACTAGTTTA CTACTACGAA ACTAAACATA AAAGATACTC AAACTTGACA 
CCAACTTACT TC 

Retrieve as FASTA