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Entry information : PmeAPx01_Cascade (Pm-APx2)
Entry ID 3960
Creation 2006-09-22 (Filippo Passardi)
Last sequence changes 2006-09-22 (Filippo Passardi)
Sequence status partial
Reviewer Qiang Li
Last annotation changes 2011-12-01 (Qiang Li)
Peroxidase information: PmeAPx01_Cascade (Pm-APx2)
Name (synonym) PmeAPx01_Cascade (Pm-APx2)
Class Ascorbate peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Pinaceae Pseudotsuga
Organism Pseudotsuga menziesii (Douglas-fir)    [TaxId: 3357 ]
Cellular localisation Cytosolic
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PmeAPx01_Cascade
start..stop		 S start..stop
PmeAPx01_TwinHarbors 188 1.37e-64 1..93 1..93
PmeAPx01_Springfield 186 7.38e-64 1..93 1..93
PmeAPx01_CoosBay 184 4.43e-63 1..91 1..91
PsiAPx01 186 1.72e-61 1..91 159..249
Literature and cross-references PmeAPx01_Cascade (Pm-APx2)
Literature Krutovsky,K.V. and Neale,D.B. Nucleotide diversity and linkage disequilibrium in adaptive trait related candidate genes in Douglas-fir Unpublished (14-DEC-2004)
Protein ref. UniProtKB:   Q5MEH6
DNA ref. GenBank:   56481224
Protein sequence: PmeAPx01_Cascade (Pm-APx2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   93 (312)
PWM (Da):   %s   10362.03 (32801.2)  
PI (pH):   %s   4.35 (4.17) Peptide Signal:   %s   cut: 34 range:34-345
Sequence
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*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

SGAHTLGRCH KERSGFEGAW TSNPLIFDNS YFKELLSGEK EGLLQLPSDK ALLEDPVFRS YVEKYAADED AFFADYAEAH LKLSELGFAE EYQ 

Retrieve as FASTA  
Remarks Partial sequence from genomic. 5' end is missing. Variety menziesii. The name next to APx refers to the breeding zone of the Douglas-fir. Slight differences compared to other PmeAPx01 (genetic adaptation to environmental conditions). See also Krutovsky and Neale, Genetics (2005), pp. 2029-2041. Identical sequences (same SwissProt accession) in NCBI AY832500, AY832499, AY832497, AY832496, AY832495, AY832493, AY832492, AY832490, AY832489, AY832488, AY832486, AY832485, AY832484, AY832482, AY832481, AY832480, AY832479, AY832478, AY832477, AY832476, AY832473.