Sequence Properties
first value : protein second value (mature protein)
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Length (aa): |
216 |
PWM (Da): |
23592.23 |
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PI (pH):
| 10.06 |
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Sequence 313
Send to BLAST
Send to Peroxiscan
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
MAASSSSFTLCNHTTLRTLPLRKTLVTKTQFSVPTKSSESNFFGSTLTHSSYISPVSSSSLKGLIFAKVNKGQAAPDFTLKDQNGKPVSLKKYKGKPVVLYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSASHKAFASKYKLPYTLLSDEGNKVRKDWGVPGDLFGALPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKFLKAA* |
Retrieve as FASTA
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Remarks |
Complete sequence from genomic (3 introns), 5 cDNA and 97 ESTs Incorrect prediction from Phytozome (splicing error). |
Promoter►
Send to BLAST
Send to cis Analysis
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Terminator +►
Send to BLAST
Send to cis Analysis
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
TCATTCTCTC TTTCTCTTCT TTCTCTTCTT TCATGCATGT CTCATGTCTG TCTCCATGAG ACCATGACCT TCTTATATTG TTTCTGTTGA GTATGAATTT TCAATAATAC CATGTTATAC
CAATGAGAAG GGAGTTGGCT TTGGTCTAGT ACAAAGATCA CAACAGGATA AGTACTGAAG TGTGGTTAAA ATGTTAGTTG GTTCTGTGTA TTTGAGTCTC TCGTTTTCAT TGTGAACACC
TCTACTATCT CTTTCTCTTG TATCAATTAA CACTTCAAGT AAGGTACACA TATCAGGTAA CTCTAGCTAG CCCTTGATTA AAATTGTCAA ACACAAAGCT TTAAGGAATT GTGTAGAATA
CATAGAACTC AAGTCTTCAC ACAATAGTTT TAGTATGTGA ACTCAAGTAC TCAATAGTGT TGTGGTCTCA ATCTAATATT TGAAATTTAA AACGGTTATT TTCGCATTGT GTTTCTTTCT
TGATTTGAGT ATAGACAGGA ATAAAGGTAG AGCCTTTGGA CTGTATGAAG AATATGGCAA AGCTCTGTTT TTTTACGCAT TTGTATTAAA TGACGTCGTA TAAGTCGGAG CACCGAGGGC
CTCTCGTTTC ATGAGAGAAA CAAAAAATCT TATCTTTCTG ACAACGGTGG TGGTGTGTGA TGTTGTCAGC CATGGCAAAG ACAGAGCTAC AACGATCTCT CTCTCTTTTC TTCTTCTTCT
GTGTCTGTCT TTAAATAGAG TCTCTTTGAA ACGAAGCAGC TTTGTCCTGT TCTGATATCC ATGGCTTTAC CTTCGTGCTT AAAGACTGGA GCTTTAATGT CTCCGGCCAC TGGATTTAAT
TTTTCCGGCA GTCTTATGAA GTCAGACAGC GGCTTCGCCG TTCCGACAAA GTTACAGAGT ACTCGAAAAG GTGATCGAGA GAGATTGAGA GTCCAAGCTA TTTTCAGTTT CCCTCCTGCG
TTTCTGACAA GAAACGGTCG AGCTGAGAAA CAGAAACAGC
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Retrieve as FASTA
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DNA ►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATGGCTGCTTCATCTTCCTCTTTCACTCTCTGTAATCACACCACACTTCGTACTCTCCCTCTGAGAAAGACCCTTGTCACCAAAACCCAATTTTCAGTTCCCACAAAATCATCAGAATCT AACTTCTTTGGCTCCACACTCACTCACTCATCGTATATCTCCCCAGTCTCTTCCTCTTCTCTCAAAGGCTTAATCTTTGCCAAGGTACATTTCTCGACTCTTGCATTGATAGATTGTTTG CTACAGTTGGGTAACAACTAGTTCTGGGAATTAGCTTCTTTGTTAGACCAATGTTTTTTGGACAATCTAAGTTCTGTTCCATTTCTTTTTTATATGTTTTTGAGTATTACGATATAAATA TTAGCAAGACAATAGATTGTTAGATACACAGCCATTTTTGAATAAGAAACAAAAGATGTAAATATTGGGTTTTAAGTCTGAATTTAAATGTTATAAGAACAGATTTATGAATGTGTTAGT GCAGAATCAAAGACAAAATCAAAGAAACTTGTAATCAGTGTTTGTTTTAGAGACCATAAACTTTCACATACCTGAAAATAAGCAAATGCTAGAATGTTCTTGAATATGTTCAATCCTTTA TTCATATGATTTAAGCTGACACGGCATATGAACTCTCTTTAACCTTCTGTGAATTGGTCTCTTTGTGATGTTTGGTGGGCAGCAGGTTAACAAGGGTCAGGCTGCACCAGACTTCACACT AAAGGATCAAAACGGAAAGCCGGTGAGCCTCAAAAAGTATAAAGGGAAGCCTGTTGTTCTCTACTTCTACCCTGCAGATGAAACCCCTGGCTGCACCAAGCAGGTTGTTAAATCTTTACT TTCTCCTCCTTCCCGCATTCATTGATCGCATATTTAGTGTTTCTAAACGTAAATGGTTTTACTTGTGTACAACAGGCTTGTGCTTTCAGAGACTCTTATGAGAAATTCAAGAAAGCTGGT GCAGAGGTCATTGGCATTAGTGGAGATGACTCTGCTTCTCACAAGGTACACACATCAAAAATCTCTGGTTTCTTGAATAAACCCATTTCTTTTTTCCGGATTTTAAAGAGAGTGGTGGGA CTTTAAACATTGTTGCAGGCGTTTGCAAGCAAATACAAACTACCGTATACATTGTTAAGCGACGAAGGGAATAAGGTGAGAAAAGATTGGGGAGTGCCTGGAGACCTGTTTGGAGCATTG CCAGGGAGACAGACTTACGTTCTTGACAAAAACGGTGTTGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACATCGACGAGACCTTGAAGTTTCTCAAAGCTGCTTGA |
Retrieve as FASTA
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CDS►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATGGCTGCTTCATCTTCCTCTTTCACTCTCTGTAATCACACCACACTTCGTACTCTCCCTCTGAGAAAGACCCTTGTCACCAAAACCCAATTTTCAGTTCCCACAAAATCATCAGAATCT AACTTCTTTGGCTCCACACTCACTCACTCATCGTATATCTCCCCAGTCTCTTCCTCTTCTCTCAAAGGCTTAATCTTTGCCAAGGTTAACAAGGGTCAGGCTGCACCAGACTTCACACTA AAGGATCAAAACGGAAAGCCGGTGAGCCTCAAAAAGTATAAAGGGAAGCCTGTTGTTCTCTACTTCTACCCTGCAGATGAAACCCCTGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGAC TCTTATGAGAAATTCAAGAAAGCTGGTGCAGAGGTCATTGGCATTAGTGGAGATGACTCTGCTTCTCACAAGGCGTTTGCAAGCAAATACAAACTACCGTATACATTGTTAAGCGACGAA GGGAATAAGGTGAGAAAAGATTGGGGAGTGCCTGGAGACCTGTTTGGAGCATTGCCAGGGAGACAGACTTACGTTCTTGACAAAAACGGTGTTGTTCAGCTCATCTACAACAACCAGTTC CAGCCTGAGAAACACATCGACGAGACCTTGAAGTTTCTCAAAGCTGCTTGA |
Retrieve as FASTA
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cDNA►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
GTGATTGTGT GATGTTTCCA TATCTTCAGC TTTTCTTCTA CTACATGCTC TAATCACGTC CTTGTAGAGG AAAAGAAAAA AAATGGCTGC TTCATCTTCC TCTTTCACTC TCTGTAATCA
CACCACACTT CGTACTCTCC CTCTGAGAAA GACCCTTGTC ACCAAAACCC AATTTTCAGT TCCCACAAAA TCATCAGAAT CTAACTTCTT TGGCTCCACA CTCACTCACT CATCGTATAT
CTCCCCAGTC TCTTCCTCTT CTCTCAAAGG CTTAATCTTT GCCAAGGTTA ACAAGGGTCA GGCTGCACCA GACTTCACAC TAAAGGATCA AAACGGAAAG CCGGTGAGCC TCAAAAAGTA
TAAAGGGAAG CCTGTTGTTC TCTACTTCTA CCCTGCAGAT GAAACCCCTG GCTGCACCAA GCAGGCTTGT GCTTTCAGAG ACTCTTATGA GAAATTCAAG AAAGCTGGTG CAGAGGTCAT
TGGCATTAGT GGAGATGACT CTGCTTCTCA CAAGGCGTTT GCAAGCAAAT ACAAACTACC GTATACATTG TTAAGCGACG AAGGGAATAA GGTGAGAAAA GATTGGGGAG TGCCTGGAGA
CCTGTTTGGA GCATTGCCAG GGAGACAGAC TTACGTTCTT GACAAAAACG GTGTTGTTCA GCTCATCTAC AACAACCAGT TCCAGCCTGA GAAACACATC GACGAGACCT TGAAGTTTCT
CAAAGCTGCT TGATCATTCT CTCTTTCTCT TCTTTCTCTT CTTTCATGCA TGTCTCATGT CTGTCTCCAT GAGACCATGA CCTTCTTATA TTGTTTCTGT TGAGTATGAA TTTTCAATAA
TACCATGTTA TACCAATGAG AAGGGAGTTG GCTTTGGTCT AGTACAAAGA TCACAACAGG ATAAGTACTG AAGTGTGGTT AAAATGTTAG TTGGTTCTGT GTATTTGAGT CTCTCGTTTT
CATTGTGAAC ACCTCTACTA TCTCTTTCTC TTGTATCAAT TAACACTTCA AGTAAGG
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Retrieve as FASTA
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