Entry information : PtaPrx53(PTA00021765)
Entry ID 4016
Creation 2006-09-28 (Christophe Dunand)
Last sequence changes 2006-09-28 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-12-27 (Christophe Dunand)
Peroxidase information: PtaPrx53(PTA00021765)
Name PtaPrx53(PTA00021765)
Class Class III peroxidase    [Orthogroup: Prx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Pinaceae Pinus
Organism Pinus taeda (loblolly pine)    [TaxId: 3352 ]
Cellular localisation N/D
Tissue type Seedlings
Inducers Flooded treatment
Sulfur deficience
Repressor N/D
Best BLASTp hits
Perox score E-value PtaPrx53
start..stop
S start..stop
PabPrx169 615 0 1..326 1..326
GbPrx60 536 0 7..324 13..328
GbPrx11 485 2e-174 1..324 1..326
PabPrx71 478 2e-171 4..324 6..323
Literature and cross-references PtaPrx53(PTA00021765)
Literature Pratt,L., Cordonnier-Pratt,M.-M., Lorenz,W.W., Zimmermann,C., Johnson,H., Anfuso,C., Kamran,D., Chhabra,D. and Dean,J.F.D. A loblolly pine (Pinus taeda) EST database from flooded roots. Unpublished (2004)
EST ref. GenBank:   CO160524.1 [5' end]   CO368993.1 [3' end]
Protein sequence: PtaPrx53(PTA00021765)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   326 (308)
PWM (Da):   %s   36370.99 (34502.9)  
PI (pH):   %s   4.79 (4.78) Peptide Signal:   %s   cut: 24 range:19-326
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MVRIELLGIS VLLVCTAGIT CTAQQTELME GYYQTLCPSA EDTIREQVDK LYHEHGNTAV SWLRTIFHDC MVESCDASIL LENTPNLVSE QQSERNFGMR NFKFLNTIKN AVEEECPGVV  SCADIIALAT REGTVMLGGP RIALKTGRRD SLQSSAAVTD KYMPLHNDTI DTVLDRFESM GIDAEGTVAL LGAHTVGRTH CVNLVNRLYP TVDPSIDPDY AEYLKKRCPT PNPEPTEVLY 
SRNDPGTPMK FDNNYYKNLI ANKGLLLIDQ RLLSDNRTSD YVNRMAQDND YFFTQFGRAL IILSENNPLT GSLGEIRKDC RYVNSL 

Retrieve as FASTA  
Remarks Complete sequence from genomic and 14 ESTs CO160524, DR112423, BX676795, CO164811, DR088951, CO167831, DR166844 (5') and CO368993, CO163727, DR088869, CO164737, CO160457, DR052510, CO363037 (3')
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGTGAGAA TTGAGTTATT GGGCATCTCC GTCTTGTTAG TCTGCACTGC AGGGATTACA TGTACTGCCC AGCAAACGGA ATTGATGGAG GGTTATTACC AAACGCTGTG CCCTAGCGCC  GAGGATACTA TCAGAGAACA AGTCGACAAA CTCTATCATG AGCATGGCAA CACTGCTGTT TCCTGGCTTA GAACAATATT CCACGATTGC ATGGTTGAGG TAGGAAAATT ATTCTTTGAT  CTCAGTTGTT TATATGAGCA TGCTACCTCT AGGAATTTCA TAGATAAGGA TCCTCTGCGC TACTTATCAG AGCTAATTGA GGTGTTGTTG ATGTTTTATA GTCCTGCGAT GCCTCCATTT  TGTTAGAAAA CACTCCAAAC TTGGTGTCGG AGCAACAATC TGAAAGGAAC TTTGGCATGC GCAATTTTAA GTTCTTGAAC ACCATCAAGA ATGCTGTCGA GGAGGAATGC CCTGGAGTGG  TCTCCTGTGC TGACATTATT GCTCTCGCTA CGAGGGAAGG GACCGTCATG GTGAGACGTT GAATTTTGTC TGGCTTTCTG GAGTTTTAGG GTTTGGAATT TCAGGAATAT TGTTTATTTT  CTTAGGAATT TTTAAAAATC ATATGGAAAA ATTAACTTCC CTTGTTTCTT TTTATTTTCC AAAATCTGGA ATTGTGTTCA TTTCAACCAA ATTAGTTGAA GAGCATTGAA GCTCAAACTA  AACTATGATT TTTTTTTTTA ATTGACTGGG AATCGAGATT AATCGTATAA TTTTATGTTA TGATTTGACA AAGCAGTTGG GAGGACCACG TATCGCTCTT AAAACGGGAA GGAGAGATAG  CCTACAAAGC AGCGCAGCAG TGACTGACAA ATACATGCCA CTGCATAACG ACACAATCGA CACTGTCTTG GATCGCTTCG AATCCATGGG AATCGATGCA GAAGGAACTG TAGCACTCCT  AGGTTTGATA TATTTATTTG ATTATTTATG TTTAGTTTTA AAATAATAAT TAATTTAGTT TTTTTTTATA ATAAGGTGGT TGTTTTACAG GAATGTTTCA AATTTAATAG AGATATTATG  GCTTGCCAGT CATAATAATG TTGGAAGGAT AAGTGTTTTT TTGAGTCTGG CCCAGTTTAG AGTGATTTGT AGACATCTCA GTTCTAGTTT CTAATATATG AGATTTTGGC ACTAGTTTCT  TGTGACTTTG GCACTAGTTT CTTGTGACTT TTAGACATTT AGATCCAACC TCTCAAGTGG TTAAAAAAAT GATTATTTTA GTTAGCATAT TTGTTTTGAA ATAATTTAAA ATTTTAATTA  AATTATCAAT AATAATnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnTTT CTTTGCATGG TACATAGGGA AAAATCTTTT TAATCATTTT GAATTTTTTT ATTAGATTTC TAAAGGTTTT TCCATTTTTT  GGGTTATTAA ATCAATCTGT AAGATGCAGT CAAATAACTG AGTGTTTTTT CTCCATGAGA TTAAGTAGAT TGCTGATTAC TTGAATGTTC TGGTCCATGT CTGATTCATT CAGGGGAATC  AACATAAAAA ACTCTTTTTT GTTATTTTAA TGCTCATCAT AAATTGATGT CTATTAATTT CTATATAAAT TTATCATATA AACATATATC TACCCTAGTA TATTTCTCGT AATAACTAAT  ATGATATTAT CGCGAACTTT ATATGGTGCA GGAGCTCACA CCGTTGGCAG GACGCACTGT GTGAATTTAG TGAACAGGCT TTACCCAACG GTTGATCCAT CTATTGATCC AGACTACGCA  GAATATCTCA AAAAGAGATG CCCCACGCCA AATCCAGAAC CTACTGAAGT CTTATACTCC CGGAACGACC CTGGGACCCC AATGAAATTC GATAACAACT ACTACAAGAA CTTGATCGCC  AATAAGGGAT TGTTGCTCAT CGATCAGCGC TTGCTTTCGG ACAACCGGAC TTCAGATTAT GTGAACAGAA TGGCGCAAGA TAACGATTAC TTCTTCACCC AATTCGGGAG GGCCCTCATA 
ATATTGTCTG AGAATAATCC CCTCACTGGA AGTCTCGGAG AAATACGAAA GGACTGTCGT TATGTCAATT CCCTGTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGTGAGAA TTGAGTTATT GGGCATCTCC GTCTTGTTAG TCTGCACTGC AGGGATTACA TGTACTGCCC AGCAAACGGA ATTGATGGAG GGTTATTACC AAACGCTGTG CCCTAGCGCC  GAGGATACTA TCAGAGAACA AGTCGACAAA CTCTATCATG AGCATGGCAA CACTGCTGTT TCCTGGCTTA GAACAATATT CCACGATTGC ATGGTTGAGT CCTGCGATGC CTCCATTTTG  TTAGAAAACA CTCCAAACTT GGTGTCGGAG CAACAATCTG AAAGGAACTT TGGCATGCGC AATTTTAAGT TCTTGAACAC CATCAAGAAT GCTGTCGAGG AGGAATGCCC TGGAGTGGTC  TCCTGTGCTG ACATTATTGC TCTCGCTACG AGGGAAGGGA CCGTCATGTT GGGAGGACCA CGTATCGCTC TTAAAACGGG AAGGAGAGAT AGCCTACAAA GCAGCGCAGC AGTGACTGAC  AAATACATGC CACTGCATAA CGACACAATC GACACTGTCT TGGATCGCTT CGAATCCATG GGAATCGATG CAGAAGGAAC TGTAGCACTC CTAGGAGCTC ACACCGTTGG CAGGACGCAC  TGTGTGAATT TAGTGAACAG GCTTTACCCA ACGGTTGATC CATCTATTGA TCCAGACTAC GCAGAATATC TCAAAAAGAG ATGCCCCACG CCAAATCCAG AACCTACTGA AGTCTTATAC  TCCCGGAACG ACCCTGGGAC CCCAATGAAA TTCGATAACA ACTACTACAA GAACTTGATC GCCAATAAGG GATTGTTGCT CATCGATCAG CGCTTGCTTT CGGACAACCG GACTTCAGAT  TATGTGAACA GAATGGCGCA AGATAACGAT TACTTCTTCA CCCAATTCGG GAGGGCCCTC ATAATATTGT CTGAGAATAA TCCCCTCACT GGAAGTCTCG GAGAAATACG AAAGGACTGT 
CGTTATGTCA ATTCCCTGTA A 

Retrieve as FASTA