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Entry information : PtPrxII06 (POPTR_0019s04070 / PtPrxIIF / Potri.019G024000)
Entry ID 4025
Creation 2006-10-30 (Nicolas Rouhier)
Last sequence changes 2006-10-30 (Nicolas Rouhier)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtPrxII06 (POPTR_0019s04070 / PtPrxIIF / Potri.019G024000)
Name (synonym) PtPrxII06 (POPTR_0019s04070 / PtPrxIIF / Potri.019G024000)
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: PrxII001]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation Mitochondria
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrxII06
start..stop		 S start..stop
LuPrxII119 327 5.24e-115 1..203 55..255
NtPrxII06a 324 5.56e-115 1..203 1..193
NtPrxII06b 323 1.65e-114 1..203 1..193
CsPrxII05 323 2.33e-114 1..203 3..203
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 4152802..4153023 220 N° 2 4153119..4153148 28 N° 3 4154362..4154520 157 N° 4 4154988..4155082 93
N° 5 4155339..4155444 104  
join(4152802..4153023,4153119..4153148,4154362..4154520,4154988..4155082,4155339 ..4155444)


exon

Literature and cross-references PtPrxII06 (POPTR_0019s04070 / PtPrxIIF / Potri.019G024000)
Literature Gama et physiologia plantarum in press.
DNA ref. Phytozome 12:   scaffold_19 (4152802..4155444)
Omic ref. ePlant:   Potri.019G024000
Protein sequence: PtPrxII06 (POPTR_0019s04070 / PtPrxIIF / Potri.019G024000)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   203
PWM (Da):   %s   21797.23  
PI (pH):   %s   8.45
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASAILKRTSPSCLLKSMADSLGIIGGSWRSYAKVAVGTDIVSAAPGVSLQKSRTWDEGVSSKFSTTPLKDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKNIIDKFKAKGIDSVICVAVN
DPYTMNAWAEKLQAKDAIEFYGDFDGSLHKSLELNKDLSVALLGHRSERWSAYVEDGMVKVLNVEEAPSDFKVSSGEVILGQI

Retrieve as FASTA  
Remarks Complete sequence from genomic (4 introns). No EST.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCATCTGCAATCCTCAAGCGAACAAGCCCTTCTTGCCTCCTCAAGTCAATGGCTGATAGTCTCGGAATCATCGGAGGATCGTGGAGATCCTACGCTAAGGTTGCAGTCGGGACTGAC
ATAGTCTCCGCTGCACCCGGCGTTTCCCTCCAAAAATCCCGGACCTGGGACGAAGGTGTTTCTTCAAAATTCTCAACAACTCCATTAAAAGACATTTTCAAGAGGTTGGCTAGTTAATTG
AGAAATTAAATACGTAAAATACCAATTTTTTAATGTTTTAATTAATTGTGATTTGTTTTCTTTAATTTCATATTTTCAGGGCAAAAAAGTTGTCATCTTCGGCCTCCCTCTGTAAGTATC
TTCTGCATTTTAATTCATGTTTTCCTGCTTCTTTTATTACATATTTGGTGGAATTGAATTTTGTTTTTTGGGTATAATTTTAATTGATTTTTGGCAATTAGGTCTCCTTTTTTTCTTTTT
TTTGGCTATTGATAGGACCCTACAGCCCACAATCAGTGGTTAAGCAGTCTAGGGATAAAAGATGAAGGTTTAATCTGGCATTCTCTTGTAATGGGGCATATTTTAAGCTCAAATACTCTA
GACAGGATTCGAATCTGTGACCTCCTTGCAAGTACAAGGAGCTCACTACCATTAGGCCAGACGCCTAGTGGTGTTGTGATTAAATATTTAAAATTTCTTGAACTTTGCAAGTGACTGACA
TAAAAAAAGGAGACAATTATTGCTCGGTTGCAGTTAGTGATTCAAGGTTAGTATAATGTTTAGTGGCTGCATTTGTGCTATCCATGACGTTAAATTAACAAGGTTATTCGGAAAATTCAT
CCTTATCTCCTGTTATGCATAGATTATTTCATTAGTGATGCTCATGAGTGTTGTAATTGGTCTCTACATGACATTGTATATCAAAATGAGTGCTATTATATTCTTACTCTTTTTGTTTCT
TCTCCGTTGTCTCTATTGGAGCAAGTAAAGCCCATGCAAGCACAAAATCAAATGCAATCCACAATATAGTTAATTTGTGAAGTTCTTTATATATATATAAGCCAAGAGAAATCTGGATTG
TACCAGACAAATAGGTGAAACAAACCTCACTTGTAAGGGTCCTTTTCTCCTATTATCCACTTAAAAACCTGGTTTCTAATCAGGAAAAAATTATAAATAGCTTCAAGTAGATGTCAAGCT
TGTGAAATTAATCATTAAGTTAACCTCATGCTATGCATCACAAACAAATCAATGAACAGCACTAAAGACAATTAATCCTCTTATTGCACTTTTCCTTTTGGTATGATAGACATGAAGTTG
GAAGCCGAAATGATTGTTGTTTCAATGCAAACACTGGTGTGGATGACAATGGGGAAGAGGAGAAGAGGGTGGTTTTTTATTGAAGAAAGTGTGGAAGCGATATTAATTTGTTTTGGGAAT
AAGATTCTCAAGACAAAGATTTGATAAAGAATGACCTAAATAGCTAAAACATGATTCTTTTTATTTTGTGACTTAATTTTGTTGATAGAAAACTATTTTTATGTGTTGCGTTTACCATGT
CCAGGGAGCATACACAGGGGTTTGTTCACAGCAGCATGTGCCTAGTTACAAAAATATAATTGATAAGTTCAAGGCTAAAGGGATTGATTCTGTCATTTGTGTGGCTGTTAACGATCCATA
TACTATGAATGCTTGGGCAGAGAAACTTCAAGCTAAAGATGCTCTGTAAGTGATTATTGTGAATCATATACATTTGTGTCTCTTTTCTTACATGTGATCTGAAAACCTTTTCTATTTGTT
TTGATTTTGCTTGTCTCCTTTTTTGTAATGTCTCAATTTCCAGTTAAACTTTATGGTTGAATCTTTACAGTTTTCTATATTCTAGGAAATTTCCTAGAAAACTAGATAATTCTCCAAAGT
AGACATGACGTTAATGGCTTTATTCCCTAATTGTGCAATTATGTGACATCACTAAACCATGTACTGTTTGCTGCTTCATAAGATGTCTGCAAGTGGAGTTAATTTTCCGGCCTTTTAATC
CCATGAATCATCGGTGCTGTTATTATTTCCATACTGTAGAAGTTTTATCCTCTTTGCAGGAACAATGTCATCTTGTTAGGGTAGTTAACTGTTCCAATATGCAGTATCTTCTTCACTTTA
TTTCCCTTTTAACTAGCCTTTTTCTATTTTAGATTGAATTTTATGGAGACTTTGATGGGAGCCTTCACAAGAGCTTGGAATTAAATAAAGATCTCTCTGTTGCTTTGCTAGGGCATCGCT
CTGAAAGAGGTATGATGCTGTCATGTCTGTTCTTGGTGTTCTAACATGCGTGTGTTTCCCAGCATTCTGAATTATCTGATCTAGGGATCTCATTTGATTTCCCTGTTTTTCTTTTTGCTG
AGTGCTCTTTGGGCCAATTAACCCTAAAATGCAATTCGTAGTTTATATTGGTTATTTACTTTCATCCACCCAAGACTCTACTGATCTGTGTGTTGATCATGGATATATTTTCCTTAGACA
TTTGACTCTTGTGTACTTTGTGTAGATGGTCTGCTTATGTGGAAGATGGAATGGTGAAGGTTCTAAATGTAGAGGAAGCTCCATCCGACTTCAAGGTTTCCAGCGGCGAAGTCATACTGG
GACAAATCTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCATCTGCAATCCTCAAGCGAACAAGCCCTTCTTGCCTCCTCAAGTCAATGGCTGATAGTCTCGGAATCATCGGAGGATCGTGGAGATCCTACGCTAAGGTTGCAGTCGGGACTGAC
ATAGTCTCCGCTGCACCCGGCGTTTCCCTCCAAAAATCCCGGACCTGGGACGAAGGTGTTTCTTCAAAATTCTCAACAACTCCATTAAAAGACATTTTCAAGGGCAAAAAAGTTGTCATC
TTCGGCCTCCCTGGAGCATACACAGGGGTTTGTTCACAGCAGCATGTGCCTAGTTACAAAAATATAATTGATAAGTTCAAGGCTAAAGGGATTGATTCTGTCATTTGTGTGGCTGTTAAC
GATCCATATACTATGAATGCTTGGGCAGAGAAACTTCAAGCTAAAGATGCTATTGAATTTTATGGAGACTTTGATGGGAGCCTTCACAAGAGCTTGGAATTAAATAAAGATCTCTCTGTT
GCTTTGCTAGGGCATCGCTCTGAAAGATGGTCTGCTTATGTGGAAGATGGAATGGTGAAGGTTCTAAATGTAGAGGAAGCTCCATCCGACTTCAAGGTTTCCAGCGGCGAAGTCATACTG
GGACAAATCTAA

Retrieve as FASTA