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Entry information : PtPrxII05 (POPTR_0013s10250 / PtPrxIIE / Potri.013G102100)
Entry ID 4026
Creation 2006-10-30 (Nicolas Rouhier)
Last sequence changes 2006-10-30 (Nicolas Rouhier)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtPrxII05 (POPTR_0013s10250 / PtPrxIIE / Potri.013G102100)
Name (synonym) PtPrxII05 (POPTR_0013s10250 / PtPrxIIE / Potri.013G102100)
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: PrxII001]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation Chloroplastic
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrxII05
start..stop		 S start..stop
PtrtrPrxII05 429 1.01e-155 1..218 1..218
PtremPrxII05 425 2.78e-154 1..218 1..218
LuPrxII16 326 5.26e-115 1..218 1..228
LuPrxII02 325 1.24e-114 1..218 1..230
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 11550187..11550843 655  
join(11550187..11550843)


exon

Literature and cross-references PtPrxII05 (POPTR_0013s10250 / PtPrxIIE / Potri.013G102100)
Literature Gama et physiologia plantarum in press.
DNA ref. Phytozome 12:   Chr13 (11550187..11550843)
Cluster/Prediction ref. UniGene:   Pth.13170
Omic ref. ePlant:   Potri.013G102100
Protein sequence: PtPrxII05 (POPTR_0013s10250 / PtPrxIIE / Potri.013G102100)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   218 (344)
PWM (Da):   %s   22926 (37593.5)  
PI (pH):   %s   8.04 (4.50) Peptide Signal:   %s   cut: 27 range:27-370
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAASFSISRL ILSSPTQIST TAATAKSFLS SLPLKPNRLP KPLRTTTRKF STISATISVG DKLPEATLSY FDSEGELQTT TISSLTSGKK SILFAVPGAF TPTCSQKHLP GFVEKSAELK 
SKGVDTIACI SVNDAFVMKA WKEDLGIKDD GVLLLSDGNG DFTKAIGCEL DLSDKPVGLG VRSRRYALLA EDGVVKVLNL EEGGAFTSSG AEDMLKAL 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron) and 12 ESTs.
DNA ►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCCGCCT CGTTCTCGAT TTCCAGACTC ATCCTCTCCT CTCCAACCCA AATATCCACC ACCGCCGCCA CCGCCAAATC TTTCCTCTCA TCTCTCCCCC TCAAACCCAA CCGCCTACCC  AAGCCCCTGA GAACCACCAC CAGAAAATTC TCCACTATCT CCGCCACCAT TTCTGTCGGG GACAAACTCC CAGAAGCCAC CCTCTCCTAC TTTGACTCCG AAGGAGAGCT CCAAACCACC  ACAATCTCCT CCCTAACATC CGGGAAAAAA TCAATCCTTT TCGCTGTCCC GGGCGCCTTC ACCCCAACAT GCTCCCAGAA ACACCTTCCA GGTTTCGTGG AGAAATCGGC AGAGCTAAAG  TCAAAAGGGG TAGACACAAT CGCGTGTATA TCAGTGAACG ACGCGTTTGT GATGAAAGCA TGGAAGGAGG ATTTGGGGAT AAAAGATGAT GGAGTGCTGC TTTTGTCTGA TGGGAATGGG  GATTTTACAA AGGCAATAGG GTGTGAGTTG GATTTGAGTG ACAAGCCAGT TGGGCTAGGA GTGAGGTCAA GGAGGTATGC GTTGTTGGCT GAAGATGGGG TTGTCAAGGT TCTTAATTTG 
GAGGAAGGTG GAGCTTTTAC TTCCAGTGGA GCTGAGGATA TGCTCAAGGC TCTCTGA 

Retrieve as FASTA  
CDS►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCCGCCT CGTTCTCGAT TTCCAGACTC ATCCTCTCCT CTCCAACCCA AATATCCACC ACCGCCGCCA CCGCCAAATC TTTCCTCTCA TCTCTCCCCC TCAAACCCAA CCGCCTACCC  AAGCCCCTGA GAACCACCAC CAGAAAATTC TCCACTATCT CCGCCACCAT TTCTGTCGGG GACAAACTCC CAGAAGCCAC CCTCTCCTAC TTTGACTCCG AAGGAGAGCT CCAAACCACC  ACAATCTCCT CCCTAACATC CGGGAAAAAA TCAATCCTTT TCGCTGTCCC GGGCGCCTTC ACCCCAACAT GCTCCCAGAA ACACCTTCCA GGTTTCGTGG AGAAATCGGC AGAGCTAAAG  TCAAAAGGGG TAGACACAAT CGCGTGTATA TCAGTGAACG ACGCGTTTGT GATGAAAGCA TGGAAGGAGG ATTTGGGGAT AAAAGATGAT GGAGTGCTGC TTTTGTCTGA TGGGAATGGG  GATTTTACAA AGGCAATAGG GTGTGAGTTG GATTTGAGTG ACAAGCCAGT TGGGCTAGGA GTGAGGTCAA GGAGGTATGC GTTGTTGGCT GAAGATGGGG TTGTCAAGGT TCTTAATTTG 
GAGGAAGGTG GAGCTTTTAC TTCCAGTGGA GCTGAGGATA TGCTCAAGGC TCTCTGA 

Retrieve as FASTA