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Entry information : PtPrxII03 (POPTR_0018s09030 / PtPrxIIC / Potri.018G083500)
Entry ID 4028
Creation 2006-10-30 (Nicolas Rouhier)
Last sequence changes 2006-10-30 (Nicolas Rouhier)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtPrxII03 (POPTR_0018s09030 / PtPrxIIC / Potri.018G083500)
Name (synonym) PtPrxII03 (POPTR_0018s09030 / PtPrxIIC / Potri.018G083500)
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: PrxII001]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation Cytosolic
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrxII03
start..stop		 S start..stop
PbPrxII03 328 7.04e-118 1..162 1..162
PtrtrPrxII02 319 3.02e-114 1..162 1..162
PtPrxIIC-2 319 3.02e-114 1..162 1..162
PtremPrxII03 311 3.31e-111 1..162 1..162
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '4028' 'complement(join(11026347..11026600,11027093..11027172,11027248..11027402))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 11027248..11027402 153 N° 2 11027093..11027172 78 N° 3 11026347..11026600 252  
complement(join(11026347..11026600,11027093..11027172,11027248..11027402))


exon

Literature and cross-references PtPrxII03 (POPTR_0018s09030 / PtPrxIIC / Potri.018G083500)
Literature Gama et physiologia plantarum in press.
DNA ref. Phytozome 12:   Chr18 (11027402..11026347)
Cluster/Prediction ref. UniGene:   Pth.12141
Omic ref. ePlant:   Potri.018G083500
Protein sequence: PtPrxII03 (POPTR_0018s09030 / PtPrxIIC / Potri.018G083500)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   162 (608)
PWM (Da):   %s   17292.04 (68616.5) Transmb domain:   %s   i13-30o
PI (pH):   %s   6.11 (7.39) Peptide Signal:   %s   cut: 22 range:22-629
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAPIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPG
AFTPTCSLKHVPGFIEKAGELKSKGVTEILCIVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVDDLKVKAANIEGGGEFTVSSADDILKDL

Retrieve as FASTA  
Remarks Complete sequence from genomic (2 introns) and 39 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCCCGATCGCTGTTGGTGATGTCTTGCCTGATGGAAAGCTCGCTTATTTCGACGAGCAAGATCAGCTCCAGGAAGTGTCCGTACACTCTCTAGTTGCCGGTAAAAAGGTCATCCTC
TTTGGTGTTCCCGGTGCCTTCACCCCCACCTGCAGGTAAACAGAGTTATTATTTTTATGGTTCCGATTTAAGTATATACATGATTCATTTTGTTGTTTGGTGATTTGTAGCTCTTGAAGC
ATGTGCCGGGGTTTATCGAGAAAGCAGGGGAGTTAAAATCAAAGGGCGTTACTGAAATTTTGTGCATCAGCGGTACGTCGTCATTTCCATTTGGGGATCTATTTTTTTAATTAATTTGAT
TTTCTTATTTTTGCGTCATTTTGATTAAAAATCTGTACAGCAACTAGGGTTTCACCATTTGTTGCGAATTAATGTAATCTGGGTTAAGTTTTTGTATCTAAGTTGACCAGTTGTTCTAAT
TGAAATTGGAAGGAAGAGCAAAGCTGCTCGAAATGCTGGTTCTGTTTTTTTCTAATTTGGGAATCTGTCCGAAACACCTAATCTGCTACTGGTATTCGTGTTGGAGGAAAAACTAAAATG
TGTGCGGCCTTACTTCAACTCGCATTGTTCTTAAGTCTGCATCTCTTGTTTTGGTTGGCGTAAATAATATGTATGTAACTTATCAGCTGGATCTGTTATATTCTGTTGGAATTCAGACTA
ATTACAGGTTTAGAAAACTAAAAGAATAAAAGAAAGTGATTGGTTTCCGTGTTTTTTGAGTTTTGGTTTCTTATTCATTTGTAGTCTCAACGACCCCTTTGTGATGAAGGCATGGGCCAA
ATCTTACCCTGAGAATAAGCATGTCAAATTCTTAGCTGATGGGTCTGCAACGTACACCCATGCTCTCGGCCTTGAGCTTGACCTGCAAGAGAAAGGGCTTGGCACACGTTCTAGGAGGTT
TGCTCTCTTGGTTGATGACCTTAAGGTGAAAGCTGCAAATATTGAAGGGGGTGGAGAATTCACTGTGTCCAGTGCCGATGATATCCTCAAGGATCTTTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCCCGATCGCTGTTGGTGATGTCTTGCCTGATGGAAAGCTCGCTTATTTCGACGAGCAAGATCAGCTCCAGGAAGTGTCCGTACACTCTCTAGTTGCCGGTAAAAAGGTCATCCTC
TTTGGTGTTCCCGGTGCCTTCACCCCCACCTGCAGCTTGAAGCATGTGCCGGGGTTTATCGAGAAAGCAGGGGAGTTAAAATCAAAGGGCGTTACTGAAATTTTGTGCATCAGCGTCAAC
GACCCCTTTGTGATGAAGGCATGGGCCAAATCTTACCCTGAGAATAAGCATGTCAAATTCTTAGCTGATGGGTCTGCAACGTACACCCATGCTCTCGGCCTTGAGCTTGACCTGCAAGAG
AAAGGGCTTGGCACACGTTCTAGGAGGTTTGCTCTCTTGGTTGATGACCTTAAGGTGAAAGCTGCAAATATTGAAGGGGGTGGAGAATTCACTGTGTCCAGTGCCGATGATATCCTCAAG
GATCTTTGA

Retrieve as FASTA