The peroxidases and oxidases database
Entry information : Pt2CysPrx01 (POPTR_0016s07280 / Pt2CysPrxA / Potri.016G072100)
Entry ID 4031
Creation 2006-11-03 (Nicolas Rouhier)
Last sequence changes 2010-07-08 (Marie Brette (Scipio))
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: Pt2CysPrx01 (POPTR_0016s07280 / Pt2CysPrxA / Potri.016G072100)
Name (synonym) Pt2CysPrx01 (POPTR_0016s07280 / Pt2CysPrxA / Potri.016G072100)
Class Typical 2-Cysteine peroxiredoxin    [Orthogroup: 2CysPrx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation Chloroplastic
Tissue types Buds
Stems
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value Pt2CysPrx01
start..stop		 S start..stop
Pt2CysPrx02 488 9e-178 1..269 1..263
Vv2CysPrx01 437 2e-157 1..269 1..273
Cs2CysPrx 432 2e-155 32..269 33..271
Ptrem2CysPrx01 425 3e-153 44..269 1..226
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 5395634..5395849 216 N° 2 5395431..5395505 75 N° 3 5395025..5395106 82 N° 4 5394850..5394929 80
N° 5 5393957..5394082 126 N° 6 5393435..5393548 114 N° 7 5393177..5393293 117  
complement(join(5393177..5393293,5393435..5393548,5393957..5394082,5394850..5394 929,5395025..5395106,5395431..5395505,5395634..5395849))


exon

Literature and cross-references Pt2CysPrx01 (POPTR_0016s07280 / Pt2CysPrxA / Potri.016G072100)
Literature Gama et physiologia plantarum in press.
DNA ref. Phytozome 12:   Chr16 (5395849..5393177)
Cluster/Prediction ref. UniGene:   Pth.1112
Omic ref. ePlant:   Potri.016G072100
Protein sequence: Pt2CysPrx01 (POPTR_0016s07280 / Pt2CysPrxA / Potri.016G072100)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   269 (298)
PWM (Da):   %s   29390.11 (32532.4)  
PI (pH):   %s   6.94 (9.54) Peptide Signal:   %s   cut: 21 range:21-318
Sequence 310
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MACSATSTTLISSIAAAATATTTKSMAFPISKNITLPNSFFGTRKSFQSRAPRSISLTRGSHSRSTFVVKASSELPLVGNIAPDFEAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEQINTEVLGVSIDSVFSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSYGVLIPDQGVALRGLFIIDKEGVIQHSTINNLAIGRSVDETKRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKDYFAAI

Retrieve as FASTA  
Remarks Complete sequence from genomic (6 introns), and 26 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTGCTCAGCTACCTCCACCACTCTCATCTCCTCTATCGCCGCCGCCGCCACCGCCACCACCACCAAATCCATGGCCTTTCCTATCTCTAAAAACATAACTCTCCCCAACTCATTT
TTTGGCACTCGCAAATCCTTCCAATCTCGCGCCCCTCGTTCCATTTCCTTGACTCGTGGCTCTCATTCTAGAAGCACCTTCGTTGTCAAAGCCTCTGTAAGTTTTTTCTCAGACTCGTTG
GTTTTTATGACCCAAATTCCCATTTCATTAACTATTTGAAAGAGCTTTTCTTCTGTGTTTGATTCAGCCTCTAACTAAGTTTGCTTTCGTTTTCTTCTGTGCAGAGCGAACTTCCATTGG
TCGGAAACATAGCACCGGATTTCGAGGCGGAGGCTGTCTTCGATCAAGAGTTCATTAATGTACTTTGTGCTGACAATGTTATCGAATATAAGGAGTTCATGTCATGTCATTCTTTTTTTT
AATTAAATTAAATTTTAATTTACATTGAAGGAATTGTATGATTACAATGTTTCTATTTTGCACAGAAATTTGGTCTTAAAAAATAGATTAAGTACCTAATTGCTACTCTGATTGTTGTAA
AATCGTAAAATTTGAAAGCCAGTTAATTGTTAGCTTGATTGGCTATGAAAATTGTGTGGTGAATTGAGCTTGCATTTGTGCTCCTGTGTTGTGTATTATTCTTTCAAACTCTTTTATGTT
TTATTGGTTAATTTTGGTTTCAGGTTAAACTGTCTGATTATATTGGGAAGAAATATGTGATTCTATTTTTCTATCCATTGGACTTCACATTTGTTTGTCCCACAGGTTTGTTTGGAACTT
AGCTTATGTCGTTTGAAGCTTTGACGAGTTGTGGATGCTAATTGTTCTTCTCATATTTTTTCTGTTTCACTTGTGTGCAGAAATCACTGCTTTTAGTGACCGTCATGAGGAATTTGAGCA
GATAAACACAGAAGTGTTGGGTGTTTCAATCGACAGTGTGGTATATATCTTCTTTTGTCAAAATCAAGAAAGAAAATTCTAGGAATCCTGTGACTTCGGCCTGAAATCTTAGTGGATCTT
ATGTTTTCACTTCAAGTTTTCAACTTTTATTTGATGAGTTGGAGCACATACTCCCGCAGACAACACACACGTTTAGGATTATATAATATGTCTCTAGATAGTCTAATTGAATTTTTTTGT
TTCAGTGGGGTGGGGGGGAAGGATTCTTGTAGCCAACCTAAAGTAGCTGGATTATAGCTTGGGTTGACTTGACTTTGACTTGAATTTGTGTGTATTATTCATATCGGTTTCCTTTATATA
AATAATGTGAGCCATGCTTGCTAGCACAATTGATAAAATTGCGTGGCCTTTGCATGTATTTTGAAAACGTATGGTTCAAATCACAGCATTCTGAGTTGATAAGTTGAAGTGAATATTGTA
ATGGACAAAAAGTAACTTGGCTGTAGAAGAAACTAGGAACTGAAAATTACTGTAAAGAATCTCAATTTGGTTTTCGTTATAAATCCATTGACTTTAGCTATAGAAGCTATCGTCTGCATA
TAATGCAATTGCAACCTTGTTGGTTGCAAGTTTGGTCATTGCCAATTTTCATTAGCTTTTGTCTGTACTGATAAAATACATAAACATTTGCTTTCAAAATTGGAACCATCCACTATCTGT
TTGTTGTATCAGAGCTGATTTTGGTATTGGACTAAAAATCATAAATTGATTATTGGTGTTGAGCGTGTCATGATATTCTCTGTGTAGTTCTCGCACCTTGCCTGGGTCCAAACGGATAGA
AAGTCTGGTGGGCTTGGAGATTTGAAGTATCCTTTGATTTCTGATGTCACCAAATCCATTTCAAAATCTTATGGAGTGCTAATTCCTGATCAGGTACGAGATGTTTTTATTAATGTTGTT
CTAAGAAACACAATGAACTCATTAAAAACCTTCATTTTTTTAATAACACTTTGTTATTGCATAACCGTGTACATGTACAAATGCACATCCATGCATTTTTTTGTCTGTTGTTTGTTACTG
GCAAGACTCAGTATCAAGCTAAACCATAATGACTTAGGTCTAGCTCACATCTAGTTCTCTATTGAATGGGAATCAGAGTGCCGTGTTATTCTCTTAGTGGCCTTATCTATCCTGTGGTTA
ATGCCACTCCCATTGTCAGACAATGCTGAGAAAAGGGCTCTCTCGTATTAATCACCACTGCCCGTTAACCTCTGCACAGTGCTTGGAAGAGGAGCCTCTGCCTCCGCGTTTTCTTTTTTT
GATACTTGGTTTTAATTTCAGGGAGTTGCTCTGAGAGGACTTTTCATCATTGATAAAGAAGGAGTCATCCAACATTCCACCATTAACAACCTTGCCATTGGGCGTAGTGTTGACGAGACG
AAGAGGACACTCCAGGTGATTTCACAAATACAGGGAAAAGATATTCTAAAACTGGAAGATTTTGTAAATTAAGGATTGGCATGATTGTACACCTGAAGTGCCTTTCGGCATATGTTTTCC
ATTCATTCTTATTGATTGCTTTTGCATTTATTACAGGCCTTGCAGTATGTGCAAGAAAATCCAGATGAAGTTTGCCCAGCTGGGTGGAAGCCTGGTGAGAAGTCCATGAAGCCTGATCCA
AAGCTGAGCAAGGATTACTTTGCTGCCATATA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTGCTCAGCTACCTCCACCACTCTCATCTCCTCTATCGCCGCCGCCGCCACCGCCACCACCACCAAATCCATGGCCTTTCCTATCTCTAAAAACATAACTCTCCCCAACTCATTT
TTTGGCACTCGCAAATCCTTCCAATCTCGCGCCCCTCGTTCCATTTCCTTGACTCGTGGCTCTCATTCTAGAAGCACCTTCGTTGTCAAAGCCTCTAGCGAACTTCCATTGGTCGGAAAC
ATAGCACCGGATTTCGAGGCGGAGGCTGTCTTCGATCAAGAGTTCATTAATGTTAAACTGTCTGATTATATTGGGAAGAAATATGTGATTCTATTTTTCTATCCATTGGACTTCACATTT
GTTTGTCCCACAGAAATCACTGCTTTTAGTGACCGTCATGAGGAATTTGAGCAGATAAACACAGAAGTGTTGGGTGTTTCAATCGACAGTGTGTTCTCGCACCTTGCCTGGGTCCAAACG
GATAGAAAGTCTGGTGGGCTTGGAGATTTGAAGTATCCTTTGATTTCTGATGTCACCAAATCCATTTCAAAATCTTATGGAGTGCTAATTCCTGATCAGGGAGTTGCTCTGAGAGGACTT
TTCATCATTGATAAAGAAGGAGTCATCCAACATTCCACCATTAACAACCTTGCCATTGGGCGTAGTGTTGACGAGACGAAGAGGACACTCCAGGCCTTGCAGTATGTGCAAGAAAATCCA
GATGAAGTTTGCCCAGCTGGGTGGAAGCCTGGTGAGAAGTCCATGAAGCCTGATCCAAAGCTGAGCAAGGATTACTTTGCTGCCATATA

Retrieve as FASTA