Entry information : PabPrx18(PAB00011864 / MA_10432379g0020 /prx18)
Entry ID 4054
Creation 2006-11-07 (Christophe Dunand)
Last sequence changes 2006-11-07 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2021-05-19 (Christophe Dunand)
Peroxidase information: PabPrx18(PAB00011864 / MA_10432379g0020 /prx18)
Name PabPrx18(PAB00011864 / MA_10432379g0020 /prx18)
Class Class III peroxidase    [Orthogroup: Prx008]
Taxonomy Eukaryota Viridiplantae Streptophyta Pinaceae Picea
Organism Picea abies (Norway spruce)    [TaxId: 3329 ]
Cellular localisation N/D
Tissue type Cell culture
Inducer Lignification
Repressor N/D
Best BLASTp hits
Perox score E-value PabPrx18
start..stop
S start..stop
PtaPrx113 615 0 1..323 1..323
PtaPrx50 583 0 1..323 1..323
PtaPrx127 565 0 1..323 1..323
PtaPrx35 564 0 1..323 1..323
Literature and cross-references PabPrx18(PAB00011864 / MA_10432379g0020 /prx18)
Literature Koutaniemi,S., Warinowski,T., Kaerkoenen,A., Alatalo,E., Fossdal,C.G., Fagerstedt,K.V., Simola,L.K., Paulin,L. and Rudd,S. Untangling the lignin biosyntehtic pathway in Norway spruce
mRNA ref. GenBank:   AM293548
Protein sequence: PabPrx18(PAB00011864 / MA_10432379g0020 /prx18)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   323
PWM (Da):   %s   34160.79  
PI (pH):   %s   8.41
Sequence
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Send to Peroxiscan
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MAPLMKSLAC NAVMVFIVCS ITHTANGQLS STFYAQSCPT ALSVVKAAVK QAVANEKRMG ASLLRLHFHD CFVNGCDGSV LLDDSSTITG EKTANPNANS ARGFDVIDTI KSNVEKACSG  VVSCADILAI SARDSVVELG GPSWTVMLGR RDSTTASKNG ANNNIPPPTS SLSNLISLFQ AQGLSTKEMV ALSGGHTIGQ ARCVNFRAHI YNETNIDSTY STSLQSKCPS TAGSGDSNLS 
PLDYVTPTAF DKNYYSNLKS KKGLLHSDQE LFNGGSSDSQ VTTYASNQNT FFSDFAAAMV KMGNIKPLTG TSGQIRKNCR KPN* 

Retrieve as FASTA  
Remarks Complete sequence from genomic and cDNA. no EST. Also found in PAB00010078 / MA_10430578g0010, in PAB00002277 / MA_10217414g0010 and PAB00039522 / MA_38027g0010,
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCGCCTT TGATGAAGAG CTTGGCGTGC AATGCTGTAA TGGTGTTTAT TGTGTGTTCT ATTACTCATA CTGCGAATGG GCAGCTGAGC TCCACGTTTT ATGCCCAATC TTGTCCGACG  GCACTGTCGG TAGTGAAAGC CGCGGTGAAG CAAGCGGTCG CTAACGAGAA ACGGATGGGG GCGTCTTTGC TCCGCCTTCA CTTTCACGAC TGCTTCGTTA ATGTAAATGC AAGAATTTAT  TTTATTAGTG ATTGAACGAG CTGAACAACG GTCATTAACC GCTATATTTT TAATTAGAGG CAACTGAGAT ATTATTGATA AGTTCTGCTT TCACGGGTTT TATACATTTG CAGGGTTGCG  ATGGGTCCGT CCTGTTGGAC GACTCCTCGA CGATTACTGG GGAGAAGACA GCTAATCCCA ATGCCAATTC GGCGAGGGGA TTCGACGTGA TCGATACCAT AAAGAGCAAT GTTGAGAAAG  CTTGCAGCGG AGTCGTTTCC TGTGCAGACA TTCTGGCCAT CTCTGCTCGT GATTCTGTTG TTGAAGTAAG GCAGATTAAC CTTGTTCAGG CTTTCCTTAT ATTGCTGTTT GAATAAAACT  GAAAGTGATC TGGAATCTGA TCATATCATG TAATGATTAA CATATTTTAT CAAATTATCA ATTACCAGTT GGGCGGGCCT TCGTGGACGG TGATGTTGGG GAGGCGAGAC TCGACAACAG  CGAGTAAAAA CGGTGCAAAC AATAACATTC CGCCTCCCAC TTCCAGTCTG AGCAACCTCA TCTCACTATT CCAAGCGCAG GGACTCTCCA CAAAGGAGAT GGTTGCACTT TCTGGTAATA  ATAATATTAT TACTACTATT TCGTTTCTTA ATTATCATTT CTTTCTTACA ATAGAATTCC TTTCCGAGAG GAAACATCAA TAATTAATGG CTATTGGTCT AATAAATTAA TCATGGGTGG  TGCTGAATTG ATATGTTATA TTCACTGTTA AATATATGTT ATATTCACTG TTAAATATGC AGGTGGTCAT ACTATCGGGC AAGCGCGGTG CGTGAATTTT AGAGCCCATA TTTACAAAGG  CGAGACTCGA CAACAGCGAG CAAAAGCGGT GCAAACAATA ACATTCCACC TCCCACTTCC AGTCTGAACA ACCTCATCTC ACTATTCCAA GCGCAGGGAC TCTCCACAAA GGAGATGGTT  GCACTTGCTG GTAATAATAA TATTATTACT ATTTCGTGCC TTAATTATCA TTTCTTTCTT ACAATAGAAT ACCTTTCCGA CAAGAAACAT CAATAAATAA TGGCTACTGG TCTAATACAT  TAATCATGGG TGGTGCTGAA TTGATTTGTT ATATTCATTG TTCAATATGC AGGTGGTCAT ACTATCGGGC AAGCGCGGTG CGTGAATTTT AGAGCCCATA TTTACAACGA AACTAACATA  GACAGTACGT ACTCCACTTC ACTTCAGTCA AAGTGTCCGA GTACCGCAGG CTCCGGAGAC AGCAACCTGT CGCCACTGGA TTATGTGACT CCCACTGCCT TCGACAAAAA CTATTACAGC  AATCTGAAAA GCAAAAAGGG ACTTCTCCAC TCCGATCAGG AACTCTTCAA TGGAGGCTCC TCTGATTCAC AGGTGACTAC GTACGCCTCC AACCAGAATA CCTTTTTCTC AGACTTTGCC 
GCCGCCATGG TTAAGATGGG AAATATCAAA CCTCTTACAG GAACCAGCGG ACAGATCCGA AAGAATTGCA GGAAGCCAAA CTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCGCCTT TGATGAAGAG CTTGGCGTGC AATGCTGTAA TGGTGTTTAT TGTGTGTTCT ATTACTCATA CTGCGAATGG GCAGCTGAGC TCCACGTTTT ATGCCCAATC TTGTCCGACG  GCACTGTCGG TAGTGAAAGC CGCGGTGAAG CAAGCGGTCG CTAACGAGAA ACGGATGGGG GCGTCTTTGC TCCGCCTTCA CTTTCACGAC TGCTTCGTTA ATGGTTGCGA TGGGTCCGTC  CTGTTGGACG ACTCCTCGAC GATTACTGGG GAGAAGACAG CTAATCCCAA TGCCAATTCG GCGAGGGGAT TCGACGTGAT CGATACCATA AAGAGCAATG TTGAGAAAGC TTGCAGCGGA  GTCGTTTCCT GTGCAGACAT TCTGGCCATC TCTGCTCGTG ATTCTGTTGT TGAATTGGGC GGGCCTTCGT GGACGGTGAT GTTGGGGAGG CGAGACTCGA CAACAGCGAG TAAAAACGGT  GCAAACAATA ACATTCCGCC TCCCACTTCC AGTCTGAGCA ACCTCATCTC ACTATTCCAA GCGCAGGGAC TCTCCACAAA GGAGATGGTT GCACTTTCTG GTGGTCATAC TATCGGGCAA  GCGCGGTGCG TGAATTTTAG AGCCCATATT TACAACGAAA CTAACATAGA CAGTACGTAC TCCACTTCAC TTCAGTCAAA GTGTCCGAGT ACCGCAGGCT CCGGAGACAG CAACCTGTCG  CCACTGGATT ATGTGACTCC CACTGCCTTC GACAAAAACT ATTACAGCAA TCTGAAAAGC AAAAAGGGAC TTCTCCACTC CGATCAGGAA CTCTTCAATG GAGGCTCCTC TGATTCACAG  GTGACTACGT ACGCCTCCAA CCAGAATACC TTTTTCTCAG ACTTTGCCGC CGCCATGGTT AAGATGGGAA ATATCAAACC TCTTACAGGA ACCAGCGGAC AGATCCGAAA GAATTGCAGG 
AAGCCAAACT AA 

Retrieve as FASTA