Entry information : MtRboh04 (Medtr3g098380.1[4.0] / Medtr3g151540.1[3.0])
Entry ID 4161
Creation 2006-12-13 (Christophe Dunand)
Last sequence changes 2006-12-13 (Christophe Dunand)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2016-05-20 (Catherine Mathe)
Peroxidase information: MtRboh04 (Medtr3g098380.1[4.0] / Medtr3g151540.1[3.0])
Name (synonym) MtRboh04 (Medtr3g098380.1[4.0] / Medtr3g151540.1[3.0])
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh001]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation N/D
Tissue type Seedling roots
Inducers Nodulation
Sinorhizobium inoculation
Repressor N/D
Best BLASTp hits
Perox score E-value MtRboh04
start..stop
S start..stop
PsRboh02 1707 0 1..923 1..940
CarRboh01 1661 0 6..923 11..927
CausRboh02 1605 0 1..923 1..937
LjRboh01 1592 0 12..923 14..930
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 44912585..44913176 592 N° 2 44913265..44913427 163 N° 3 44913514..44913562 49 N° 4 44913688..44913801 114
N° 5 44914278..44914700 423 N° 6 44915200..44915583 384 N° 7 44915667..44915762 96 N° 8 44916030..44916145 116
N° 9 44916256..44916358 103 N° 10 44916540..44916613 74 N° 11 44917586..44918133 548 N° 12 44918424..44918533 110
join(44912585..44913176,44913265..44913427,44913514..44913562,44913688..44913801 ,44914278..44914700,44915200..44915583,44915667..44915762,44916030..44916145,449 16256..44916358,44916540..44916613,44917586..44918133,44918424..44918533)


exon

Literature and cross-references MtRboh04 (Medtr3g098380.1[4.0] / Medtr3g151540.1[3.0])
Literature REFERENCE 1 VandenBosch,K., Endre,G., Hur,J., Beremand,P., Town,C.D., Bowman ,C.L., Craven,M.B., Cho,J. and Fraser,C.M. ESTs from roots of Medicago truncatula 72 h after Rhizobium inoculation, 2001.
REFERENCE 2 Prasad Lohar D, Haridas S, Gantt JS and VandenBosch KA. A transient decrease in reactive oxygen species in roots leads to root hair deformation in the legume�rhizobia symbiosis. New Phytologist
(2007) 173: 39�49.
DNA ref. GenBank:   CT010504.7 (96991..102936) Phytozome 12:   chr3 (44912585..44918533)
EST ref. GenBank:   BG644996 [5' end]
Cluster/Prediction ref. Phytozome Gene 12:   31059281
Omic ref. Gene atlas:   Mtr.2439.1.S1_at   Mtr.45354.1.S1_at Legoo:   Mtr.45354.1.S1_at
Protein sequence: MtRboh04 (Medtr3g098380.1[4.0] / Medtr3g151540.1[3.0])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   923
PWM (Da):   %s   104716.45 Transmb domain:   %s   o361-380i443-465o503-525i538-560o575-592i728-745o
PI (pH):   %s   9.19
Sequence 964
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGTDEVEGEIHNHRDSDTELIALHNGSFSGPLNKRVGRRSAKLNVSNSTSAIDLNHQEQDEEKAEQDYVEVTMDIQGDSVALHSVKTVPGNNGEDEKLVLLGKGMEKKRSFGASFVRTASIRMKHVSQELKKLTSFSKQVGPQKVYDRTKSAASHALRGLKFINNKTDVGWFEVEKQFDILSTHDAFLHRSLFAKCIGMNKESEAFAGELFDAMSRRRNIHGDSINKPQLKDFWDQISDNSFDSRLRTFFDMVDKDADGRITEDEIKEIICLSATTNKLSNIQKQAEEYAALIMEELDPDDTGFIMVNDLEILLLHGPTHSTRGDSKYLSQMLSIKLKGTYEYNPVRKRYRDAIYFLQDNWQRTWILVLWIGVMCGLFAYKFMQYRRKDAYEVMGHCVCMAKGAAETLKLNMAIILLPVCRNTITWLRNKTKLGIAVPFDDNLNFHKVIAVAVATGVGIHAIYHLTCDFPRLLHANSEKYKLMEPFFGKQPTSYWHFVKSWEGVTGIVMVVLMTIAFTLASPWFRKGRVKLPKPLNSLTGFNAFWYSHHLFVFVYALLVVHGIKLYLTREWHKKTTWMYLVIPIIIYALERLTRALRSSIKPVRILKVAVYPGNVLALHMSKPQGFRYKSGQYMFVNCAAVSPFEWHPFSITSSPGDDYLSVHIRTLGDWTRSLRVKFSESCLPPTHGKSGLLRAECMQGDSSPSTLPKVLIDGPYGAPAQDYKQYDVVLLVGLGIGATPMISILKDIVNNFKAMEEDEGTTIEEGTSSKSPRPSQHKRTGLNSFKTKRAYFYWVTREQGSFDWFKGVMNEVAEDDHRGVIELHNYCTSVYEEGDARSALIAMLQSLNHAKNGVDIVSGTRVKSHFAKPNWRSVYKRIALNHPQTRVGVFYCGPPALTKELRQLGSDFSHNTTTKYDFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (Chromo 3, 11 introns) and 5 ESTs. Cultivar="A17", "R108".
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGGAACTGACGAAGTTGAAGGAGAAATCCACAATCATCGTGACTCTGATACAGAACTCATTGCTCTTCACAATGGTTCCTTCAGTGGACCTTTGAACAAAAGGGTAGGAAGAAGAAGTG
CAAAGTTAAACGTTTCAAATTCAACTTCTGCCATAGATCTTAACCATCAAGAACAAGATGAAGAAAAAGCAGAGCAAGATTACGTTGAAGTTACTATGGATATTCAAGGTGACTCTGTTG
CTTTACACAGTGTTAAAACTGTTCCTGGAAACAATGGTGAAGATGAGAAACTTGTTTTGCTTGGTAAAGGAATGGAGAAGAAAAGATCTTTTGGTGCTTCTTTTGTTAGAACTGCTTCGA
TTCGTATGAAACATGTTTCTCAGGAGTTGAAGAAATTAACTTCTTTTTCGAAACAAGTTGGACCTCAGAAAGTTTATGATAGGACTAAGTCTGCAGCTTCTCATGCTCTTAGAGGACTCA
AGTTTATCAATAATAAGACTGATGTTGGATGGTTTGAGGTTGAAAAGCAGTTTGATATTCTTTCAACTCATGATGCTTTTCTTCATCGCTCTCTCTTTGCCAAATGCATAG
GTCAGTATC
GTGTGTTCGGTGTTTGTGTGTCTGTGTTGTTTTCGATGTGTTTATTGAATTACCCTTGTTTTTTGGATTTTTTATGTAGGGATGAACAAGGAGTCTGAGGCATTTGCAGGTGAGCTATTT
GATGCTATGTCTAGGAGGAGGAATATTCATGGAGATTCAATTAATAAGCCACAATTGAAGGATTTCTGGGACCAGATATCTGACAATAGTTTTGATTCTAGGCTCAGAACATTCTTTGAC
AT
GTAAGTTTTTGCCTTTTCTTTCTTATGAATATTTAAACAAAAAAGGTTATGCATTAAATGCTCAAGTGTACTAACTTGGAATGTAGGGTTGATAAAGATGCGGATGGCAGAATCACCG
AGGATGAAATTAAAGAG
GTATGGAATCATAAATTTTACTTTTTAGTTTCATCAATTGATAAAACTAATTTTTTCCAGTATGTAATTTTGTCACCAACAAAATTGGATTATTCTCGATGTT
TAATTATGTTTTCACTTTTCAGATTATTTGCCTTAGTGCCACTACAAACAAACTCTCAAACATACAGAAGCAGGCAGAGGAATATGCTGCTTTGATCATGGAAGAACTAGACCCTGATGA
TACTGGATTTATCATG
GTAATTATTACTTATAAGATCATCTTATACACTACTGACTTGATCTTCGTATTCATATTTTTCACTTGGTTGCTAGTGGTACTTAAGCTGTTATTTGGTCGCTC
TGTGCAGATTTTCGAAAGGATCTTGGCATGTATTATTTATTATTCCTTATATAAAGCTTTATTTCCTTCAATTAGAGCATCTTTAAATGACATGTAAAAATGTTTTGTCTCACATTATAA
TTTTATTCCTCATTTCTCTATTGATTCAACCTCAATATTTGTAGTGAACTCTTGATGATCTCAAACATTAAAGTTCTGTTGCTAATATATTGTTGACTGTCTACTGCTCTCATTTTTTAA
TAAATTTAATTGTTTTTCATTTACCTAATCTCTGTATCAATTGTTTATCCCTAGTCTCTATCTCATACTGATGTTGCTTCTCATTTTAGCCGTAATTTTTTGGCCATTTGGTGGTTATTG
TTTTGAATGCAGGTAAATGACCTAGAGATACTCTTGTTGCATGGACCAACTCATTCTACACGAGGAGATAGTAAGTACCTGAGCCAAATGCTAAGCATAAAGCTTAAGGGTACATATGAA
TACAATCCTGTTCGGAAGAGGTATAGAGATGCCATTTACTTTCTGCAGGACAATTGGCAAAGAACTTGGATATTGGTACTATGGATTGGTGTTATGTGTGGTCTATTTGCCTACAAATTC
ATGCAGTACAGAAGAAAAGATGCTTATGAAGTAATGGGTCATTGTGTGTGCATGGCTAAAGGTGCAGCTGAGACACTCAAATTGAACATGGCTATTATCTTGTTACCTGTTTGTCGAAAC
ACCATCACATGGCTTAGGAACAAGACCAAACTAGGCATTGCTGTTCCTTTTGATGATAACCTCAACTTCCACAAG
GTAAGTTTTACAGACCGTTCTTCATTTGTGAGCGACAAGATTAGA
AAACTAATCTAAAAAAAAATTATAGTGGCAACTGGTGCATGGTTATCACTATCTTACGATACATGCGAGCCAAATCTCGATTCGATACTAAATTGAACCTAATCGATACGAATCTTAGTA
CGTATCTATTTGGACATGAATCTCATATTGCATCCCAATTCTTTCTAATGAATTACTACCTAAACTTAGTGCAGCCAACCACTTTTTCTGTCAGTTTTTAATAAGCAAACACTTTTCTTT
TCTCATTTGATATATAACCTGAATCTTGAATTATTTTGAGGTATATGATATATCTGCTTACAATTTTGTTATTTCACTTATTTTTTTACTTAAAAATGGTGTATTTTTATCGGCAATGTA
TCTTAGGATTCAATTCTTGATTTGGAAAAATATCTCCTGACTCAAGATTTGAATCCCGATTTGATATCCATGAAATGATGAGTGTCTGTTGCAGGTGATTGCTGTGGCAGTAGCAACTGG
AGTTGGTATACATGCTATTTATCATCTTACTTGCGACTTTCCTCGCCTTCTTCATGCAAATAGTGAAAAGTACAAGCTCATGGAACCATTTTTTGGAAAGCAACCAACAAGTTATTGGCA
TTTTGTGAAATCATGGGAAGGAGTAACGGGGATTGTAATGGTTGTTTTAATGACAATAGCCTTCACACTGGCTAGTCCTTGGTTCAGGAAAGGAAGGGTTAAGCTACCTAAACCCCTCAA
TAGTCTAACTGGTTTCAATGCCTTTTGGTACTCTCATCATCTCTTTGTATTTGTCTATGCCCTTTTGGTTGTGCATGGAATCAAACTTTACTTGACTCGGGAATGGCACAAAAAAACG
GT
TAGCACCTTCCTTGAATTATCCTTTTTATCCAGTTTCTCAGCTAATTCTTGTATATTCTAAGGATTGTATGTGTTTTGTAGACTTGGATGTATTTGGTTATTCCCATCATCATTTATGCA
TTGGAACGACTGACTAGAGCACTCAGATCAAGCATCAAGCCTGTAAGAATATTAAAG
GTGAGTGTTGAATATTGAATCAGTGTCACTACTTGAAGAAACATATGAAGGTTTTAAAATTTT
GTTCTCCAAATTCATTCATAGATATAAATTTCAGCATATTATTCACATATGCTTTCAATTGACAGATCAAGGATTGTTTATCTGGAACTTTGAAAAGATTGTTGTTCCATTAACTAATAT
TTTTTGGCTAATATTCAAAAAATAGAGATACATTAGAAAAAATAATATGCATGTCTGACCAAATTTTGTGTGTCCTATTTGAAGGTGGCTGTTTATCCTGGAAATGTGTTGGCTCTTCAT
ATGTCAAAGCCTCAGGGGTTTAGATACAAGAGTGGACAATACATGTTTGTAAATTGTGCTGCTGTCTCTCCATTTGAATG
GTACTACGAATTTGAAGAAACATAATTAGTAGTCTTTGCA
TGCTATATGAATTGTTGCATCTAAATATACCTTCTTAAAATGTTAAACGTTGTTATATATGGTTTCACAGGCATCCGTTTTCCATAACCTCTTCCCCAGGAGATGACTACCTTAGTGTTC
ACATCAGAACATTAGGTGACTGGACCAGAAGTCTCAGAGTCAAATTCTCAGAG
GTGTGAATTCAGGTTAACTTTTGTTGGGTAATAATGCTATTATAACTTAATTATTTTGACAACTTAC
ATAGCAAAACTCACTGATTACTACATTTATCTCTATTTGGATGCATTCCAATTTTCTTAGCAATTTGTGGTTTCTCTTTTGACTATATTGCTTTGGTTTGGTTCTATATTTCAGAGTTGC
CTTCCACCGACCCATGGGAAGAGTGGACTTCTAAGAGCTGAATGCATGCAAGGGGATAGCAGCCCAAG
GTAACACACATACTATCTTTACTCCTAAATATAAGCTTTTAAAAAAAATATG
TTTGAGTTGAGAAGGTAAAATCCATTGTGCTGATAAATATCAACAAAAAACTAATTGTCAATTGGTAGTAGCCGACATTTGCATGTAAATGGATGAGTTGTGTTGGTTGATAATGCATTT
CATATAATTTACATAATTTAGGGTGGTTCTATTTTAACTAAAATACTTTTAAATATTTGTTATTTTCTCACAAAATTTGACTAGAAAGTTACTAGAACATTTTTTAAGGTTTTTAAACAA
ATTATTTAATCATTATGAAACTCTTTTTAAATCCAAAAACTTAATTATTTCAATTGGATTTGGATTTGGTTATACAGTGTGTATAATTAGTATTTACTTTACATAGATGTACTCTTTTTT
TAAGAAATGATTACCAAAATAGATGATTGATAATAAATTAAAATCAGATAATTATGCATTCATTAAATTAAGTTGTTATGTTGCTTGTTAAATATTAATATGCCGTTCCTCTTAGACTTT
GAAATTTATTCACAAAAAAACATAGACTATTTGTCTTATGTAGCTTGGGTGTGAATAAATGATAGTCTGCCGACCGATATAACCAATGCATGCAGCAATAGCACCGTGTCCAATTTGCTT
ACGATTTTATTATCCTTGTGGCCAAATGGAATTGGCTGTTGATTTGAAGTTTACACTACGATGATTATTATTGTCAAAATAAATAGACTAGGTGAAAATGGACACTTGTGTTGAAAATTC
TTGTTCTCAGCTAAAGTAGGTAATCAACCCAGCCCAACATTTTAATTAGTGTTAGAAAATGTTAAATAAATATATAAAATATAAGGCTAAAGCAAGTGAATTTTTATGACATTTAGTGAC
AAACTAATGATGCATAATCATTTATAATATATGGTTTATTGCTTAGTGACCAGTAAATAATGCATTATTGTACTATGCAGTACTCTCCCTAAAGTTTTGATCGATGGTCCTTATGGAGCG
CCTGCACAAGACTACAAGCAATATGATGTAGTTTTACTTGTAGGCCTAGGAATTGGGGCTACCCCAATGATAAGTATACTAAAGGACATTGTGAATAATTTCAAGGCTATGGAAGAAGAT
GAAGGGACCACTATAGAGGAGGGAACAAGTAGTAAATCACCGAGACCATCACAACACAAGAGAACCGGTTTGAATAGCTTTAAAACTAAGAGGGCTTATTTTTACTGGGTTACTAGAGAA
CAGGGTTCATTTGATTGGTTTAAAGGAGTAATGAATGAGGTGGCTGAAGATGATCATAGGGGAGTAATTGAGCTACACAATTATTGTACTAGTGTTTATGAAGAGGGTGATGCTCGCTCT
GCTCTTATTGCTATGCTCCAATCACTTAATCATGCTAAAAATGGTGTGGATATCGTCTCTGGAACACGCGTCAAGTCTCACTTTGCTAAACCTAATTGGCGTAGTGTCTACAAGCGCATT
GCACTTAATCATCCACAAACACGCGTTG
GTGAGTTCTCATTCTTCAACTAACATTAAGAGTATCATCTATACGCTACCGCAGAGAAATTATCATGTGTGCGTGCGTGAGATAACTAAAGA
TACTATAAAGAAATTCCAACAATGAATAATTTTTTTACCAAAACAATGAATACTTCTTAAAATTGCTTAGAGGAGACATATGATTATCCTTTTAAAAGTTGAATGCTTATCAATTTCAAT
ACTGGCATGGAGAAAGAAATAATTGGTGTGGTTAATTTAATGCTAGCATCACTGAGGAGTGTGATTTATGTAATGCAGGGGTGTTTTACTGTGGGCCACCTGCACTTACTAAAGAGCTTC
GTCAATTAGGTTCGGACTTTTCTCACAACACAACCACCAAATATGATTTCCACAAGGAGAATTTCTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGGAACTGACGAAGTTGAAGGAGAAATCCACAATCATCGTGACTCTGATACAGAACTCATTGCTCTTCACAATGGTTCCTTCAGTGGACCTTTGAACAAAAGGGTAGGAAGAAGAAGTG
CAAAGTTAAACGTTTCAAATTCAACTTCTGCCATAGATCTTAACCATCAAGAACAAGATGAAGAAAAAGCAGAGCAAGATTACGTTGAAGTTACTATGGATATTCAAGGTGACTCTGTTG
CTTTACACAGTGTTAAAACTGTTCCTGGAAACAATGGTGAAGATGAGAAACTTGTTTTGCTTGGTAAAGGAATGGAGAAGAAAAGATCTTTTGGTGCTTCTTTTGTTAGAACTGCTTCGA
TTCGTATGAAACATGTTTCTCAGGAGTTGAAGAAATTAACTTCTTTTTCGAAACAAGTTGGACCTCAGAAAGTTTATGATAGGACTAAGTCTGCAGCTTCTCATGCTCTTAGAGGACTCA
AGTTTATCAATAATAAGACTGATGTTGGATGGTTTGAGGTTGAAAAGCAGTTTGATATTCTTTCAACTCATGATGCTTTTCTTCATCGCTCTCTCTTTGCCAAATGCATAG
GGATGAACA
AGGAGTCTGAGGCATTTGCAGGTGAGCTATTTGATGCTATGTCTAGGAGGAGGAATATTCATGGAGATTCAATTAATAAGCCACAATTGAAGGATTTCTGGGACCAGATATCTGACAATA
GTTTTGATTCTAGGCTCAGAACATTCTTTGACAT
GGTTGATAAAGATGCGGATGGCAGAATCACCGAGGATGAAATTAAAGAGATTATTTGCCTTAGTGCCACTACAAACAAACTCTCAA
ACATACAGAAGCAGGCAGAGGAATATGCTGCTTTGATCATGGAAGAACTAGACCCTGATGATACTGGATTTATCATG
GTAAATGACCTAGAGATACTCTTGTTGCATGGACCAACTCATT
CTACACGAGGAGATAGTAAGTACCTGAGCCAAATGCTAAGCATAAAGCTTAAGGGTACATATGAATACAATCCTGTTCGGAAGAGGTATAGAGATGCCATTTACTTTCTGCAGGACAATT
GGCAAAGAACTTGGATATTGGTACTATGGATTGGTGTTATGTGTGGTCTATTTGCCTACAAATTCATGCAGTACAGAAGAAAAGATGCTTATGAAGTAATGGGTCATTGTGTGTGCATGG
CTAAAGGTGCAGCTGAGACACTCAAATTGAACATGGCTATTATCTTGTTACCTGTTTGTCGAAACACCATCACATGGCTTAGGAACAAGACCAAACTAGGCATTGCTGTTCCTTTTGATG
ATAACCTCAACTTCCACAAG
GTGATTGCTGTGGCAGTAGCAACTGGAGTTGGTATACATGCTATTTATCATCTTACTTGCGACTTTCCTCGCCTTCTTCATGCAAATAGTGAAAAGTACA
AGCTCATGGAACCATTTTTTGGAAAGCAACCAACAAGTTATTGGCATTTTGTGAAATCATGGGAAGGAGTAACGGGGATTGTAATGGTTGTTTTAATGACAATAGCCTTCACACTGGCTA
GTCCTTGGTTCAGGAAAGGAAGGGTTAAGCTACCTAAACCCCTCAATAGTCTAACTGGTTTCAATGCCTTTTGGTACTCTCATCATCTCTTTGTATTTGTCTATGCCCTTTTGGTTGTGC
ATGGAATCAAACTTTACTTGACTCGGGAATGGCACAAAAAAACG
ACTTGGATGTATTTGGTTATTCCCATCATCATTTATGCATTGGAACGACTGACTAGAGCACTCAGATCAAGCATCA
AGCCTGTAAGAATATTAAAG
GTGGCTGTTTATCCTGGAAATGTGTTGGCTCTTCATATGTCAAAGCCTCAGGGGTTTAGATACAAGAGTGGACAATACATGTTTGTAAATTGTGCTGCTG
TCTCTCCATTTGAATG
GCATCCGTTTTCCATAACCTCTTCCCCAGGAGATGACTACCTTAGTGTTCACATCAGAACATTAGGTGACTGGACCAGAAGTCTCAGAGTCAAATTCTCAGAGA
GTTGCCTTCCACCGACCCATGGGAAGAGTGGACTTCTAAGAGCTGAATGCATGCAAGGGGATAGCAGCCCAAG
TACTCTCCCTAAAGTTTTGATCGATGGTCCTTATGGAGCGCCTGCAC
AAGACTACAAGCAATATGATGTAGTTTTACTTGTAGGCCTAGGAATTGGGGCTACCCCAATGATAAGTATACTAAAGGACATTGTGAATAATTTCAAGGCTATGGAAGAAGATGAAGGGA
CCACTATAGAGGAGGGAACAAGTAGTAAATCACCGAGACCATCACAACACAAGAGAACCGGTTTGAATAGCTTTAAAACTAAGAGGGCTTATTTTTACTGGGTTACTAGAGAACAGGGTT
CATTTGATTGGTTTAAAGGAGTAATGAATGAGGTGGCTGAAGATGATCATAGGGGAGTAATTGAGCTACACAATTATTGTACTAGTGTTTATGAAGAGGGTGATGCTCGCTCTGCTCTTA
TTGCTATGCTCCAATCACTTAATCATGCTAAAAATGGTGTGGATATCGTCTCTGGAACACGCGTCAAGTCTCACTTTGCTAAACCTAATTGGCGTAGTGTCTACAAGCGCATTGCACTTA
ATCATCCACAAACACGCGTTG
GGGTGTTTTACTGTGGGCCACCTGCACTTACTAAAGAGCTTCGTCAATTAGGTTCGGACTTTTCTCACAACACAACCACCAAATATGATTTCCACAAGG
AGAATTTCTAG

Retrieve as FASTA