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Entry information : MtRboh08 (Medtr3g098320.1[4.0] / Medtr3g098340.1+ Medtr3g098320.1[3.5] / Medtr3g151600.1 [3.0])
Entry ID 4167
Creation 2007-07-23 (Christophe Dunand)
Last sequence changes 2007-07-23 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2014-07-31 (Christophe Dunand)
Peroxidase information: MtRboh08 (Medtr3g098320.1[4.0] / Medtr3g098340.1+ Medtr3g098320.1[3.5] / Medtr3g151600.1 [3.0])
Name (synonym) MtRboh08 (Medtr3g098320.1[4.0] / Medtr3g098340.1+ Medtr3g098320.1[3.5] / Medtr3g151600.1 [3.0])
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh001]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation N/D
Tissue type Roots
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value MtRboh08
start..stop		 S start..stop
PsRboh02 1216 0 1..911 1..940
MtRboh04 1216 0 1..911 1..923
CausRboh02 1206 0 1..911 1..937
CarRboh01 1203 0 3..911 12..927
Literature and cross-references MtRboh08 (Medtr3g098320.1[4.0] / Medtr3g098340.1+ Medtr3g098320.1[3.5] / Medtr3g151600.1 [3.0])
DNA ref. GenBank:   CT010504 (66884..77427)
Cluster/Prediction ref. UniGene:   Mtr.2020
Other ref. Gene atlas:   Mtr.42239.1.S1_at  Mtr.42239.1.S1_at
Protein sequence: MtRboh08 (Medtr3g098320.1[4.0] / Medtr3g098340.1+ Medtr3g098320.1[3.5] / Medtr3g151600.1 [3.0])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   911
PWM (Da):   %s   103311.57 Transmb domain:   %s   o338-357i416-438o476-498i519-541o556-573i715-732o
PI (pH):   %s   9.25
Sequence
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*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MGADEIEEIS DNIELIGGGI TERVPQNGSL SGRFNKMVSR RKVKISSKEQ NEEENECAQI TLDIPGDSAV SVEPLAGNND RGEDGKLDLL SKRIEKKRSH LKQVSKELKR KVGTEKKKYD  RTTSAASNAL KGLNFITKAA RDDGWEKVYG EFYRLTKKTN RLLPRSMFAE CIGMKNSKTF ADELLNVISK RREIDGDPLN EAELKEIWEA ISDDRYDTRL KTFFDMIDKD ADGRITEDEI  KQIIILCAGT NRLASIENHA GQYAALIMEE LDPDGLRFIT LDQLEMLLLH GSTNFTTLDS KDLNKMLSSI KPKPRYEGGV GKRCMDTIYF LPDSWKRNWI LVLWIGVMLG LFAYKFVQYR  RKAAYEVMGH CVCMAKGAAE TLKLNMALIL LPVCRNTVTW LRSKTKLGIV VPFNDNLNFH QVIAVAVAIG VGIHAIYHLA CDFPRLLHAN SEKYKLMEPF FGKQATNYWH FVKSWEGVTG  IIMVVLMAIA FTTASPWLRK RKVEEPKTPN CLQPLLNSVT GFNVFWYTHH LFVFVYALLI VHGFKLYFTK EWYKKTTWMY LAIPVTIYAL ERLTRILRPR IKSVKILQAV VYKKDLNSRG  DVLGLRVSKP EGFRYKSGQY MFVKCANVSP FEWHPFSITS APGDDYLSVH IKENGDWTNS LIKEFSKSCL PPTHGKSGLL RAECMQGDSS STPLPKVLVD GPYGAPAQDY KKYEVVLLVG  LGIGATPMIS IVKDILNNIK AKEEEERITN MEEGTIGKSS RPSEHKKTDL SNFKTRKAYF YWMAGEQGFF DWFKGVINEV AEEDHKKVIE IHSHLTSVYE DGDARSALVT VLQSLNHAKE 
GLDILNGTPI ASYFARPNWR SVYNRIANNH PQKRIGVFYC GAPAPIKELR GLALEFSQER APKFDFHKEN F 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo III, 9 introns) and 3 ESTs (CX540995, AL384081, AL384082). Softberry has predicted four independent ORFs and only the first and the last encode for the NADPH oxidase. The mRNA match only with the 3' end which not allow to confirm the reliability of the splicing based on homologies with close homologs.