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Entry information : MtRboh09 ( Medtr7g060540.1[4.0] / Medtr7g067680.1[3.0])
Entry ID 4169
Creation 2006-12-20 (Christophe Dunand)
Last sequence changes 2016-04-05 (Catherine Mathe)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2016-04-06 (Christophe Dunand)
Peroxidase information: MtRboh09 ( Medtr7g060540.1[4.0] / Medtr7g067680.1[3.0])
Name (synonym) MtRboh09 ( Medtr7g060540.1[4.0] / Medtr7g067680.1[3.0])
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh003]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation N/D
Tissue type Roots
Inducers Glomus versiforme infection
Mycorrhiza
Repressor N/D
Best BLASTp hits
Perox score E-value MtRboh09
start..stop		 S start..stop
PsRboh04 1469 0 1..851 1..854
CarRboh07 1463 0 1..851 1..840
CcajRboh08 1415 0 2..851 3..851
GmRboh11 1389 0 1..851 1..859
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '4169' 'join(21876949..21877318,21877425..21877590,21878181..21878229,21878454..21878567,21878654..21879463,21879553..21879648,21879735..21879850,21879949..21880051,21880582..21880676,21880748..21880913,21881296..21881448,21881532..21881660,21881755..21881833,21882328..21882437)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 21876949..21877318 368 N° 2 21877425..21877590 164 N° 3 21878181..21878229 47 N° 4 21878454..21878567 112
N° 5 21878654..21879463 808 N° 6 21879553..21879648 94 N° 7 21879735..21879850 114 N° 8 21879949..21880051 101
N° 9 21880582..21880676 93 N° 10 21880748..21880913 164 N° 11 21881296..21881448 151 N° 12 21881532..21881660 127
N° 13 21881755..21881833 77 N° 14 21882328..21882437 108  
join(21876949..21877318,21877425..21877590,21878181..21878229,21878454..21878567 ,21878654..21879463,21879553..21879648,21879735..21879850,21879949..21880051,218 80582..21880676,21880748..21880913,21881296..21881448,21881532..21881660,2188175 5..21881833,21882328..21882437)


exon

Literature and cross-references MtRboh09 ( Medtr7g060540.1[4.0] / Medtr7g067680.1[3.0])
Literature Harrison,M.J., Liu,J., Town,C.D., Van Aken,S., Utterback,T., Cho,J. and Fraser,C.M. ESTs from roots of Medicago truncatula after colonization with Glomus versiforme, 2001
Protein ref. UniProtKB:   G7L3G1
DNA ref. GenBank:   AC169182 (14941..20426) Phytozome 12:   chr7 (21876949..21882437)
EST ref. GenBank:   BG587472  AW256730 [5' end]  BE941228.1 [3' end]
Cluster/Prediction ref. Phytozome Gene 12:   31084104
Omic ref. Gene atlas:   Mtr.27053.1.S1_at  Mtr.28283.1.S1_at  Mtr.3593.1.S1_at
Protein sequence: MtRboh09 ( Medtr7g060540.1[4.0] / Medtr7g067680.1[3.0])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   851 (296)
PWM (Da):   %s   96849.32 (31154.5) Transmb domain:   %s   o292-311i431-453o473-495i664-681o
PI (pH):   %s   8.87 (9.14) Peptide Signal:   %s   cut: 27 range:27-322
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSSEKEGTDESSKWILESIDIVPNVEVPKKDEENESKVIKASDNE
AFSNVDNLRSRNNNNNINNNGSKMRRMESGAARGLKGLRFLDRTVTGKEADAWKSIEKRFTQHAVDGMLSKDKFG
TCMGMGADSKDFAGELYEALARRRNICAENGITLNEARVFWEDMTNKDLESRLQVFFDMCDKNGDGRLSEEEVKVIVLSASANRLGNLKQHADNYASLIMEELDPDHNGYIEMWQLETLL
REMVSAEDGKPKLGTRTQTLTRAMIPCKYRTPIRKWITKTAEFVNEQWKKIWIIVLWLAINLVLFVWKFLQYKERPAYEVMGSCLCFAKGSAETLKFNMALIVLTMCRRTLTKLRGTFLS
QIIPFDDNINFHKIIAVGVVIGTLIHVGVHVSCDFPRLVSCPTEKFMAILGSGFDYKQPSYLTLVTSPPGITGIFMVLIMAFSFTLATHYFRKSVVTLPSPLHHLAGFNSFWYAHHLLIL
VYILLVIHGYFLFLTKAWHKKTTWMYLVVPLVLYGIERVHPFYKSKDHRVNVIKAIIYTGNVLALYMTRPQGFKYQSGMYLFVKCPDISSFEWHPFSITSAPGDDYLSVHIRTLGDWTTE
LRNIFAACEPQSAIPRGSLMRMETRAYSKSSIDNSKPSIRYPKILIKGPYGAPAQSYKHYDVLLLIGLGIGATPMISILKDILNQMKMASPQEKSEKGSFSSNSSDEDRKGPERAYFYWV
TREQASFEWFKGVMDDIAEHDSDGVIEMHNYLTSVYEEGDARSALIAMIQRLQHAKNGVDVVSESRIRTHFARPNWKKVFSQLATTHESSRIGVFYCGSPTLTKSLKSLCQEFSLNTSTR
FHFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 7, 13 introns ) and 3 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCATCAGAAAAAGAAGGTACAGATGAATCATCAAAATGGATTCTTGAAAGCATTGATATCGTTCCTAATGTGGAAGTTCCTAAAAAGGATGAAGAAAATGAAAGCAAGGTTATAAAA
GCTTCTGATAATGAAGCATTTTCGAATGTCGATAATTTGAGGAGCAGGAATAATAATAACAATATTAACAATAATGGAAGCAAAATGCGAAGGATGGAATCAGGTGCTGCAAGAGGGCTT
AAGGGTTTACGGTTTCTTGATAGAACGGTTACAGGTAAAGAAGCTGATGCATGGAAGTCAATTGAGAAACGTTTTACGCAACATGCAGTTGATGGAATGTTATCAAAAGACAAATTTGGA
ACATGCATGGGGGTAACAATGTTGTTTTTGCTTTCTTGTTTTTGTTTTTTGTTTCTAATGATTTTAGTTGTTTGTTCTGAAGTTTGAGTTATGAATGTTGAAAACAATGTTTATATAGGT
ATGGGAGCAGATTCAAAGGATTTTGCTGGGGAACTGTATGAGGCATTGGCAAGGAGAAGGAATATATGTGCAGAAAATGGAATTACTTTGAATGAAGCTAGGGTTTTTTGGGAGGATATG
ACTAATAAAGATCTTGAATCAAGACTTCAAGTGTTCTTTGACATATGTAAGGTCTATAAACATAGAAAACTTTATGTATATACCTTTCGCATGTTTTTTTTTGTCGGGTAGCCCTGGTGG
CTGGAATCCACCTTTTTCAAGATGAATAAGTGGGGTGTTCGAGGTTCGAACCCCAGCCCTGCATATAACAATCCATGTACCTGCCAACTTAGCTATGCTCATGGGGACAAACCTTCTGCA
TGTTAATAACTTTAGATGGGCAAAACCTGCTTGAGTTGGCCTAGTGGTATTGACTTGGGACCTGGGAGGGTGCTCCTCCTTAAGGTCTCACGTTCGATTCTCCACGGTGCCAAATTGAGT
GGGCTAATTTAACTTCTTAAAAAAAAAATTAGATAGCCAAATGTTGGTATATTAGTAGCTTCTTCAAAAAAACAAAACTTTAGATAGGCAAATGTTGGTATAGTAGATGTTATTATGTTA
CTATTTTCTCCTTCTTCCGGGGTTGAGCTCTGGCCCTTTTAGCTCCTTCAACATTTTAACCTTTAGCTCGAACTATTTGAGCTACCTACTTTTGCATGTTAAATGAATGATTTCATATTG
AGTGGAGTTATATAAAAGAACTAAAGTCATTTTCAGGTGTGACAAGAATGGAGATGGTAGGTTATCCGAAGAGGAGGTTAAGGAGAGGTGAGTATTGAGATTATGTAAATTCTTTTTATA
CCAATCTTTTTTCCTATGATGCACTGACCAAAAACAGACTCAAACATTGGTAATAGTTTGAAAAATTGAAATGATTGTATGTTCATGTGTCAGATATTTGGTCACGCTTTCAATACATAT
TGTCGAGTGTTGGTGCTACGTAGCTTTATACAATTCTGTTAAATAGAATTCTAACTGTTTTTGTGTAAAAGGTTATAGTGTTGAGTGCTTCTGCAAATAGATTGGGAAATCTTAAACAAC
ATGCTGATAATTATGCTTCTTTGATCATGGAAGAGCTTGATCCAGATCATAATGGATATATAGAGAGGTAATTAGAATTAGAAGCCGATTAAATTGTAACGACATATATCTTCTGTTCAG
AATGTTTTTTAAATTTACATCTCTTGAAAACAGATGTGGCAGCTTGAAACTCTATTAAGGGAAATGGTTAGTGCAGAAGATGGCAAACCAAAACTTGGTACAAGAACACAAACTTTAACT
AGAGCTATGATACCATGCAAGTATCGAACTCCTATTAGAAAATGGATCACGAAAACCGCAGAATTTGTAAATGAACAGTGGAAAAAAATATGGATTATCGTTCTTTGGTTAGCCATAAAC
TTGGTACTTTTCGTTTGGAAGTTTCTCCAATACAAGGAAAGACCAGCATATGAAGTAATGGGATCATGTCTATGTTTTGCAAAGGGTTCTGCTGAGACTCTCAAATTCAACATGGCTCTA
ATTGTCCTTACAATGTGTAGAAGAACACTTACAAAGTTACGAGGAACATTTCTTAGTCAAATCATTCCTTTTGATGACAACATAAACTTTCATAAAATCATTGCAGTTGGCGTAGTTATA
GGAACTTTAATCCATGTAGGTGTGCATGTATCTTGTGATTTTCCAAGATTAGTTTCTTGTCCGACCGAAAAATTTATGGCGATACTTGGATCCGGTTTTGATTATAAGCAGCCTAGTTAC
TTGACCCTTGTTACAAGTCCTCCTGGTATAACTGGAATTTTCATGGTCTTGATTATGGCTTTTTCTTTCACTTTGGCAACTCATTACTTTAGAAAAAGCGTTGTCACGTTACCTTCGCCG
TTGCATCATTTGGCCGGATTCAATTCCTTTTGGTATGCTCATCATTTGCTTATTCTGGTGTATATACTCCTAGTCATACATGGATACTTTCTATTTCTCACAAAGGCTTGGCATAAAAAG
ACGCGGTATGTGTCATTCTCTTAACATTCTAAATTATTCAAATTACCAAAATTTCAGTACCGATTCAGATTTAAATTATTCTCTCTAAATGCAGACTTGGATGTACCTTGTAGTTCCACT
AGTGCTCTATGGTATTGAGAGAGTTCATCCATTTTATAAGAGTAAAGATCACCGCGTGAACGTCATTAAGAGGTATGTGTGTGTGTCAACAAATTCTCCTCCTTGAATTTTTATTTATGC
CGAAACAGGAAAATAATATTACTATTTGAATATTTCAGGCAATAATCTACACAGGAAATGTTCTAGCACTATACATGACCAGGCCACAAGGATTCAAGTATCAAAGTGGAATGTATCTTT
TTGTCAAGTGTCCAGATATATCTAGTTTTGAATGTGGTAATTATGATCTACTTGGATGATATTTTGAGCACAAAAGTTAATTTTTCTGCAAAATTATTTTTACTTAGGACAATCGAATTT
ACTCTTTTTTACAGGCATCCTTTCTCCATCACCTCTGCACCTGGAGACGATTACTTGAGTGTTCATATACGAACCTTAGGAGATTGGACTACAGAACTTAGAAACATATTTGCAAAGAGG
TGATGTTTATGTATGAACTGAGAACTCAACCATATGTTCAGTTAGGTATGAAGCACGCATACAGACACGGACACCGGACAACACGAACACTAACATGTGGACATCGCTAATAATTTGAGA
AAATTACATAATTCAGTGTAATTACAAGTGTCGGTGTCGGACACGACACATGTCCGACACCAGGACACGCCTAATCCGAGAAGTGTCCGTGCTTCATAGAGTCAAGGTTTATCAGAAATA
GGGTTGAATATGTTTTTAGAATTACGGATGTTTCAAGCTTCGTCGCTATAAAAAATTGAACCACAATATTCGGTCCCTGCATTTTATCCCTACCAATGCTTTTAGTACGTACAGAGGACT
AAGAAACGTATCCATTATTTTTAAAGGCATGACTAAAAACACCCGTTTTTATAAAACGGTAGGAGCCTCAAAGGTATAGAGACTAAAAACATATTTAACCTGAGAAATATGATGATCTTT
GAACTTGAACATCTAGTTGTGTACTATTTACTAAGACTTGAACATGCAGGCTTGTGAGCCTCAAAGTGCAATCCCAAGGGGAAGCCTTATGAGGATGGAAACTAGAGCATACTCAAAATC
AAGTATTGACAATTCAAAACCAAGAGGTGAATAAAAACTCTTGGTACTTATTTTTCCATAATGTTATGATGTACTGATATTATTTTACCCTTTCTAGTATTAGATATCCAAAGATCCTCA
TTAAAGGACCCTATGGAGCACCAGCACAAAGCTATAAGCATTATGATGTACTCTTGCTCATTGGTCTAGGAATTGGGGCCACACCAATGATAAGTATTTTGAAAGATATCTTGAACCAAA
TGAAGATGGCAAGTCCTCAACAAAAGTAAGTCACAACGAGCCGATTTGACCAACACTTTAGATTGAAGGCCTGTATGGCGGCACGATACTAACATATGTGGTTACATTAAATAACATTAT
TCTTCTCAAATTATTATAGGTGTCTATATGTCAGTGTTGAGTCTTTTTCACATATGTGTCAATACTTCATATCTTCTCCAAAAGTACCTAAGGAATTAGTTTCTCGATTTTTTAGATGCT
CTCTCATTAGGTTCCACATAAACATAAACCGTAAATGAAGAACGAAAGATCTCATAAACTAAAAGCTAACCAAAATTAGGCCAAAATTAACAAAGTTTTATATACTTTTTGTAGGTGTAT
ATTTATAGTTTATGCACAAGTACTAATTCTTAGGGTTAACATAACAGGAAAAGTCTGAGAAGGGCTCCTTCAGTAGCAATAGCTCCGACGAAGATAGAAAAGGTCCTGAAAGAGCATACT
TTTATTGGGTAACAAGGGAACAAGCTTCATTTGAATGGTTCAAAGGTGTTATGGATGATATTGCAGAACATGACAGTGATATGTAAGATTAAGTACCAAACTTTTTGCTTTTTAACCTCG
ACCTAACACAGTTTTAGAAGTTTTTAACATGTATCAATGCTGCAGGGTGTTATAGAAATGCATAACTATTTGACTAGTGTTTATGAGGAAGGTGATGCAAGATCTGCACTTATTGCCATG
ATTCAGAGGCTGCAGCATGCTAAAAATGGAGTTGATGTAGTTTCAGAAAGCCGGGGGTATATTTTGATTTAGTTCTCGTTTAGTGTTAACATTTTTTCATAATGCAATCAAAGATTAAGC
TTTTATCATATGATGTTATACCATATCCAGATAAGAACTCATTTTGCTAGACCAAACTGGAAAAAGGTCTTCTCTCAGTTAGCTACAACACACGAAAGTTCTCGAATAGAGGTATGCATA
ATTGTGAAATTTTTAAGCCCTAATTGATTTAAGAAAATGTTTTCTGTCATTAATTTTAATTACAAAACGATCACTTTATGTACGTCCTTTTCTGTTTTCAAATATTTGGATGGAAACACT
ACAATTTTTGTATCTTTGTTATGGTTTTATATTCTGGCCACGGTTGTTACGCTGAAAATAGTTATATTACGGAAAAATGTGGACGATGCAGTTGAAATTGTGGTTGCGATGACATTACTA
ACACCTCAAAATCCTTAATATTGAGGCCTCAATTTCAATTACAGTCCGTAACTTAAAACCATGATTGTTTCCTATGCATTTTTTTTTGTCAAGTAGCCTAGTAGCTAGAAATTCACCTTT
CATAAGGTGAATAAGCGAGGTGTCCGGGCTTCAAACCCGGACCCCTGCATATATCATGCATTGTCCCTACCAGATTGTTTCCTATTCAAATCTTCGAAATTTATGTTGCTATTTACTTGA
TACAGGTGTATTTTACTGTGGAAGTCCTACTCTTACAAAATCATTGAAGAGCCTTTGTCAAGAGTTTAGCCTAAACACATCTACCCGCTTTCATTTTCATAAAGAGAACTTCTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCATCAGAAAAAGAAGGTACAGATGAATCATCAAAATGGATTCTTGAAAGCATTGATATCGTTCCTAATGTGGAAGTTCCTAAAAAGGATGAAGAAAATGAAAGCAAGGTTATAAAA
GCTTCTGATAATGAAGCATTTTCGAATGTCGATAATTTGAGGAGCAGGAATAATAATAACAATATTAACAATAATGGAAGCAAAATGCGAAGGATGGAATCAGGTGCTGCAAGAGGGCTT
AAGGGTTTACGGTTTCTTGATAGAACGGTTACAGGTAAAGAAGCTGATGCATGGAAGTCAATTGAGAAACGTTTTACGCAACATGCAGTTGATGGAATGTTATCAAAAGACAAATTTGGA
ACATGCATGGGTATGGGAGCAGATTCAAAGGATTTTGCTGGGGAACTGTATGAGGCATTGGCAAGGAGAAGGAATATATGTGCAGAAAATGGAATTACTTTGAATGAAGCTAGGGTTTTT
TGGGAGGATATGACTAATAAAGATCTTGAATCAAGACTTCAAGTGTTCTTTGACATGTGTGACAAGAATGGAGATGGTAGGTTATCCGAAGAGGAGGTTAAGGAGGTTATAGTGTTGAGT
GCTTCTGCAAATAGATTGGGAAATCTTAAACAACATGCTGATAATTATGCTTCTTTGATCATGGAAGAGCTTGATCCAGATCATAATGGATATATAGAGATGTGGCAGCTTGAAACTCTA
TTAAGGGAAATGGTTAGTGCAGAAGATGGCAAACCAAAACTTGGTACAAGAACACAAACTTTAACTAGAGCTATGATACCATGCAAGTATCGAACTCCTATTAGAAAATGGATCACGAAA
ACCGCAGAATTTGTAAATGAACAGTGGAAAAAAATATGGATTATCGTTCTTTGGTTAGCCATAAACTTGGTACTTTTCGTTTGGAAGTTTCTCCAATACAAGGAAAGACCAGCATATGAA
GTAATGGGATCATGTCTATGTTTTGCAAAGGGTTCTGCTGAGACTCTCAAATTCAACATGGCTCTAATTGTCCTTACAATGTGTAGAAGAACACTTACAAAGTTACGAGGAACATTTCTT
AGTCAAATCATTCCTTTTGATGACAACATAAACTTTCATAAAATCATTGCAGTTGGCGTAGTTATAGGAACTTTAATCCATGTAGGTGTGCATGTATCTTGTGATTTTCCAAGATTAGTT
TCTTGTCCGACCGAAAAATTTATGGCGATACTTGGATCCGGTTTTGATTATAAGCAGCCTAGTTACTTGACCCTTGTTACAAGTCCTCCTGGTATAACTGGAATTTTCATGGTCTTGATT
ATGGCTTTTTCTTTCACTTTGGCAACTCATTACTTTAGAAAAAGCGTTGTCACGTTACCTTCGCCGTTGCATCATTTGGCCGGATTCAATTCCTTTTGGTATGCTCATCATTTGCTTATT
CTGGTGTATATACTCCTAGTCATACATGGATACTTTCTATTTCTCACAAAGGCTTGGCATAAAAAGACGACTTGGATGTACCTTGTAGTTCCACTAGTGCTCTATGGTATTGAGAGAGTT
CATCCATTTTATAAGAGTAAAGATCACCGCGTGAACGTCATTAAGGCAATAATCTACACAGGAAATGTTCTAGCACTATACATGACCAGGCCACAAGGATTCAAGTATCAAAGTGGAATG
TATCTTTTTGTCAAGTGTCCAGATATATCTAGTTTTGAATGGCATCCTTTCTCCATCACCTCTGCACCTGGAGACGATTACTTGAGTGTTCATATACGAACCTTAGGAGATTGGACTACA
GAACTTAGAAACATATTTGCAAAGGCTTGTGAGCCTCAAAGTGCAATCCCAAGGGGAAGCCTTATGAGGATGGAAACTAGAGCATACTCAAAATCAAGTATTGACAATTCAAAACCAAGT
ATTAGATATCCAAAGATCCTCATTAAAGGACCCTATGGAGCACCAGCACAAAGCTATAAGCATTATGATGTACTCTTGCTCATTGGTCTAGGAATTGGGGCCACACCAATGATAAGTATT
TTGAAAGATATCTTGAACCAAATGAAGATGGCAAGTCCTCAACAAGAAAAGTCTGAGAAGGGCTCCTTCAGTAGCAATAGCTCCGACGAAGATAGAAAAGGTCCTGAAAGAGCATACTTT
TATTGGGTAACAAGGGAACAAGCTTCATTTGAATGGTTCAAAGGTGTTATGGATGATATTGCAGAACATGACAGTGATGGTGTTATAGAAATGCATAACTATTTGACTAGTGTTTATGAG
GAAGGTGATGCAAGATCTGCACTTATTGCCATGATTCAGAGGCTGCAGCATGCTAAAAATGGAGTTGATGTAGTTTCAGAAAGCCGGATAAGAACTCATTTTGCTAGACCAAACTGGAAA
AAGGTCTTCTCTCAGTTAGCTACAACACACGAAAGTTCTCGAATAGGTGTATTTTACTGTGGAAGTCCTACTCTTACAAAATCATTGAAGAGCCTTTGTCAAGAGTTTAGCCTAAACACA
TCTACCCGCTTTCATTTTCATAAAGAGAACTTCTAA

Retrieve as FASTA